Pempheris klunzingeri: 139215183
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Entry
139215183 CDS
T11454
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139215183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139215183
03036 Chromosome and associated proteins [BR:
pklu03036
]
139215183
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139215183
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139215183
mRNA degradation factors
5'-3' decay
Decapping complex
139215183
Chromosome and associated proteins [BR:
pklu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139215183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139215183
NCBI-ProteinID:
XP_070702163
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All DBs
Position
16:5533046..5541397
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPAAVQPAPITQGKAVGAPQIAGGASQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKIMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHSSGGDCDVEEIEE
KPGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaatgttggcccagtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagctgcggtccagccagcacccataactcaagga
aaggctgtaggagcgccccagatagcaggcggtgcctctcaggacggaggaggtatcaag
tttggagatgactggaagaagagcctgaagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaaagagaactc
ctgatgggcatcttcgagatgggttgggagaaaccatcccccatccaggaggagagcatt
cccatcgccctgtctggaagggatattctggctcgagctaagaatggaacggggaaaagt
ggagcctatctcatcccactgctggagagaatagacctgaagaaggaccacatacaggca
cttgtcatggtacccacccgtgagctggcactgcaggtgagccagatctccattcagatc
agcaaacacctgggaggagtcaaaatcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgcctggatgagaccgtgcatgtggtcatcgccacgccgggtcggatcctg
gacttgataaagaagggagtggcaaaggtggataaagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggactttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctacgagataaacctgatggaggaactcactctgaag
ggcattactcagtactacgcctacgtcacagagaggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcaatcatcttctgtaactccactcagagggtg
gagcttttggctaagaagatcactcagctgggctactcctgcttctacatccatgccaag
atgatgcaggaatataggaaccgtgtgttccacgacttcagaaacggactgtgcagaaac
ctggtctgcacagatctcttcaccagaggtattgacatccaggctgtcaacgtagtcatc
aactttgacttccctaagaatgctgagacgtacctccatcgtattggaagatcagggagg
ttcggtcacttgggcttggccatcaacctgatcacatcagaggaccgcttcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccactcgtccggcggcgactgtgatgtggaggagatcgaggag
aagccgggacgccagcaggacagcacctaa
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