Pempheris klunzingeri: 139215211
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Entry
139215211 CDS
T11454
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
pklu Pempheris klunzingeri
Pathway
pklu03015
mRNA surveillance pathway
pklu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139215211 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
139215211 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139215211 (pabpc1b)
03041 Spliceosome [BR:
pklu03041
]
139215211 (pabpc1b)
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139215211 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
139215211 (pabpc1b)
Spliceosome [BR:
pklu03041
]
Complex C
Other components
Complex C specific factors
139215211 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
HTH_58
YflT
Motif
Other DBs
NCBI-GeneID:
139215211
NCBI-ProteinID:
XP_070702201
LinkDB
All DBs
Position
16:complement(10865287..10872544)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYVKNFGEDMDDEKLRELFNKYGNAMSIRVMTDDNGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPAAGQMAQLRPSPRWATQGVRPQHFQNMPGAMRPSAPRPQTFSTMRPASQVPRMMST
QRVAAQTMGPRPANAAAAAGAPVRGVPQYKYAAGVRNPQQHMTAQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSAGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtgctcccagttaccccatggcctccctctacgtcggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagcccagccggagctatcctgtcgatc
cgggtctgtagggacatgatcacccggcgctcccttggatacgcctatgtcaacttccaa
cagccagcggacgctgaacgtgctctggacaccatgaactttgatgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgtgatccgtcactgagaaaaagcggcgtgggaaac
atctttatcaagaatcttgacaagtccattgacaacaaggctttatatgacaccttctct
gcttttggcaacatcctgtcatgcaaggtggtttgtgacgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggcagccgaacgagccattgagaaaatgaatggc
atgctgcttaatgaccgaaaagtattcgtgggtcgcttcaaatctcgcaaggagcgtgag
gctgagctgggtgcccgagccaaggagttcacaaatgtctacgtaaaaaactttggtgaa
gacatggatgatgagaagctgagggaactattcaataaatacggtaacgccatgagtatc
cgtgtcatgacagatgacaatggaaagtctcgaggctttgggtttgtcagctttgagagg
cacgaggacgcccagaaggcagtggatgagatgaatggtaaggagttgaacggcaagcta
atctacgtcggccgtgcccagaaaaaggtggagcgacagacggaactcaaacgcaaattt
gagcaaatgaaacaagaccgaatgactcgctaccagggtgtcaatttatacgtgaagaac
cttgatgatggaattgacgacgaacgtctgcgaaaggagttctcgccgttcggcaccata
accagtgccaaggtcatgatggagggcgggcgcagcaaaggtttcggctttgtctgcttc
tcatccccagaggaagccaccaaggcggtcacagaaatgaatggacgcattgtagccacc
aagccattgtatgtggccctggcccagaggaaagaggagcgtcaagctcacctgaccaac
cagtacatgcagcgaatggccagtgtgcgtgcagtgccaaacccagtcatcaatccttac
cagccagccccgccctcaggctacttcatggcagccatacctcaggcccagaaccgtgct
gcttactacccggctgctgggcagatggcccagctccgcccgagcccgcgctgggccacc
caaggtgtccggccacaacacttccagaatatgccgggtgctatgcgtccctcagcaccg
cgccctcagaccttcagtaccatgcggcctgcctcccaggtgccccgcatgatgtccacc
cagcgcgtcgcggctcagaccatgggcccccgaccagccaacgcagccgctgcagcaggc
gcccctgtgcgtggagtcccccagtacaagtatgcagcaggagtccgcaatccacagcag
cacatgactgctcagccacaagtcaccatgcagcagcctgctgttcacgttcagggacag
gagcctctgactgcctccatgctggctgccgctccaccacaggaacagaagcagatgctg
ggtgagcgtctgtttccactgatccagaacatgcacccaagcctggcaggaaagatcact
ggcatgctgctggagattgacaactcagagctgctccacatgttggagtccccggagtct
ctccgctccaaggtggatgaggcggtggctgtgcttcaggcccaccaggccaaggaggcc
gcccagaagacagtgacaaactcggctggtgtcccaagtgtctga
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