Pempheris klunzingeri: 139216469
Help
Entry
139216469 CDS
T11454
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pklu
Pempheris klunzingeri
Pathway
pklu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139216469 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pklu03041
]
139216469 (ddx42)
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139216469 (ddx42)
Spliceosome [BR:
pklu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139216469 (ddx42)
Complex B
139216469 (ddx42)
Complex C
U2 SnRNP specific factors
139216469 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
139216469
NCBI-ProteinID:
XP_070703691
LinkDB
All DBs
Position
17:complement(20893130..20901742)
Genome browser
AA seq
898 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPPLTQKTHTSFGATGSSGGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESISNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ESQAAKDMRKLEEKEKEKKTAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEDNIDY
DSDGNPIAPATKKIILPLPPIDHTEIDYPPFEKNFYNEHEELSNLTGTQVLELRHKLNLR
VSGAAPPKPATSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHIKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLPSGS
DKWNWLTRRLVEFTSSGSVLIFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIS
DFKRKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTTFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGADSSERSSSLLSSSSGFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAASSGPP
KLSTKSSSSSGWTSAGSLSSVPTEAANGPDRSQGSAMPMPMPMPMPSFSSAGSLSSVPTS
LTSYTPPAPPPQRDRHAEDRGRHGDGYHRHSDRYSGEDRHGDRDRHGDRDRDRHGDRDRY
SSSRHSDGCNIDGRRRDREDRRSERDGGERGTGDGRDRGDDSFAVPEPPKRRKSRWDN
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgagggtttgggtttggaggattttct
cttgcagggaaaaaagaggagcctccgcttactcagaaaactcacacatcgtttggagcc
acaggatcaagtgggggatacgggaagaaccagcagctcccatcattttacaaaatagga
acaaaaagagctaattttgatgaggaaaacgcgtattttgaggatgatgaagaggagtcc
atcagtaacgttgatctgccgtacatcccagcggagaactcacccacacggcagcagatg
cagtctggtggtggctcagacagtgaagatgacccattggatgccttcatggcagaggtt
gagagtcaagctgctaaagacatgagaaaattagaagagaaggaaaaggagaaaaagact
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagaaaatcccacagccgggttgacccaagaggaagaggaggacaatattgactat
gacagtgacggaaacccaatcgctcctgccaccaagaaaatcatcctgccgcttcctccc
attgaccacacggagattgattacccaccctttgagaaaaacttctacaatgagcatgag
gaactcagcaacctgactggaactcaagtgttggagttgcgacacaaactgaacttgagg
gtctctggtgctgcccctccaaaacctgctaccagctttgcccacttcagctttgatgag
cagctcatgcaccagatccgcaagtctgagtacacccagcccacacctattcagtgccag
ggtgtgcctatagctctgtctggacgtgacatgattggcattgcaaaaactggcagtggc
aaaactgcagcttttatctggcccatgctggttcacattatggaccagaaggaactagag
gcaggagaagggcccatcgcagtcattgtgtgtcccaccagagagctttgtcagcagatc
catgcagagtgcaagcgttttgggaaagcctactcattgcgctctgtggcggtttatgga
ggaggcagcatgtgggaacaggccaaagctctgcaagagggagcagagattgtggtgtgc
actccgggtcgtctgattgatcatattaaaaagaaggccacgtccctgcagagagtgaca
tacctggtgtttgatgaagcagatcgcatgtttgacatgggctttgaatatcaggttaga
tctattgctagccacgttcgcccagacagacaaactcttctttttagtgctacttttcga
aagaagatcgagaggctcgctagagacatcttggttgatcctatccgtgtggtgcaggga
gacatcggagaggccaacgaggatgtgacccaggtggtggagctcctgcccagcgggtca
gataagtggaactggctgacccgacggctggttgagttcacctcctccggctcagtcctc
atctttgtcaccaagaaggcaaactgtgaggaactggccactaacctgatacaggagggc
tacagcctgggcctcctgcacggagacatggaccagagtgagaggaacaaggtcatcagt
gacttcaagagaaagaatctgcctattctggtggccactgatgtggctgctcgtggtctg
gacatcccatccattcgcacagtggtgaactatgatgtggcacgagacatcgacacgcac
acgcacaggatcggtcgaactgggcgtgcgggagagaagggtgtggcttacactctcctc
accaacaaagacaccacatttgctggtgaccttgtgagaaatttagagggagctaatcaa
tccgtgtccaaagatctgatggatttagccatgcagaatccctggttcaggaaatccaga
tttaagggtggtaaaggaaagaagctgaatatcggtggaggtggtcttggttacagagag
agaccaggcctgggggccgacagttctgaacgcagcagcagcttgttgtcttcctctagt
ggctttgaaggctacagcaaaccagccactggggcgatgggagaccgcatgtcagccatg
aaacaagcctttcaggctcagtataagagccactttgtggcagcgtccagcggccctcca
aagctcagcaccaaatccagcagctcatcgggttggaccagcgccggcagtctcagctct
gtgcccacagaggccgccaacggtccggaccggtcccagggcagcgccatgcccatgccc
atgcccatgcccatgcccagcttcagcagcgccggctccctcagctcagtgcccaccagt
ctaaccagttacactccacctgccccccctccacaaagagacaggcacgcagaggaccgg
ggccgccacggagatggttaccaccgccacagcgaccgatacagcggagaggatcgccac
ggagatcgagatcgccatggagacagagatcgggaccgccacggggaccgcgaccgctac
agcagcagccgccacagcgacggttgtaacatagatggaagaaggcgggacagagaggat
cggaggagtgagagggacgggggagagagggggactggggatgggagggacagaggagac
gatagcttcgctgttcctgaaccaccaaaacgtagaaagagcaggtgggacaactga
DBGET
integrated database retrieval system
