Pempheris klunzingeri: 139217155
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Entry
139217155 CDS
T11454
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pklu Pempheris klunzingeri
Pathway
pklu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139217155 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139217155 (xab2)
03041 Spliceosome [BR:
pklu03041
]
139217155 (xab2)
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139217155 (xab2)
Spliceosome [BR:
pklu03041
]
Complex B
Other components
Prp19-related factors
139217155 (xab2)
Complex C
139217155 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_8
TPR_2
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
139217155
NCBI-ProteinID:
XP_070704548
LinkDB
All DBs
Position
17:19643218..19651056
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKLTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYFIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDEDTDVELRLARFEELIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQMDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRPENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHDYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDDDDEDQGPDEVPLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacctgatgttatttttgaggacgatgacctgccttatgaa
gaggaaatcatcaggaacccctactcggtcaagtgctggatgcgttacatcgaattcaaa
caaaatgggcccaaactcaccctcaacatgatttacgagcgcgctctgaaggagctgcct
ggcagctataagctgtggtacaattatctgagggagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaggctatgaagagatcaataactgccatgaaagggcactggtgttc
atgcacaagatgcctagaatatggcttgattactgccagttccttgttagtcaatgcaag
atcacgagaagtcggcaaacatttgaccgtgcactcagggctcttcctgttacccagcac
ccacgcatctggcctctttatctccgctttgtccgtaacttgcccctgcctgagacagcc
atccgggtgtaccgcaggtaccttaagctttctccagagaatacagaggagtacatagac
tatttgcggtccgttggccgcttggacgaagcagctgtgcggctagcagctgttgtcaat
gacgagagctttgtgtccaaggagggcaagtccaactatcaactctggcatgagctctgt
gacctgatctcccagaaccctgataaggtgacgtctctgaatgttggagccatcatccga
ggaggcctcactcgcttcacagaccagcttggaaaactctggtgctctttagccgactat
ttcatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttacg
gtggtaactgtaagggatttcacacaagtgtttgatagttacgcccagtttgaagagagc
atgatcgcagcaaagatggagaccactgctgagatggggcaggatgaagatgaggacaca
gacgtggagctcagactggcccgctttgaggagctgatagccaggcgtcctctcctgttg
aacagcgtcctactgcggcagaacccgcataatgtccatgagtggcataagcgggtaaaa
ctgtatgatggcaatccacggcagatcatcaatacatacaccgaggcagtgcagactgtg
gatccaatgaaagccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcaaatggatgatgccaggacaattttcgagaaagccaccaaggtgaac
tacaagcaggtggatgacctcgctgcggtgtggtgtgaatatggggagatggagctacgt
cctgagaactatgaacaggctctgcgcatactgagaaaagctacagctatcccatctaag
aaagcagagtacttcgatgcatctgagccagttcaaaacagagtctacaagtccctgaag
gtctggtctatgctggcggacttggaggagagtcttggcactttccagtctacgaaagcg
gtgtatgaccgcatcatcgacctccgcatcgccacgcctcagatcatcatcaattatgcc
atgttccttgaagagcacgactattttgaggaaagtttcaaggcgtatgaacgcggtatt
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttacgggggcaagaagctggagagagccagagacttatttgagcaagccttagat
ggctgccctgccaaatttgccaagaccatttacctgctttatgccaagttggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagctacgcaggcagtagaaact
gacgagagacatcacatgttcaacatctacatcaagagagcagctgaaatttatggagtc
acatatactagagcaatttaccagaaggctatcgaggtccttcctgatgagcatgccagg
gacatgtgtctgcgattttctgacatggagagtaaactgggcgagatcgatcgagccaga
gcaatctactcctactgctcccagatctgtgaccccagggtgactgctaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaggacactattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
ctcaaggccacaacaagctccacaggcactgtgtcagatctcgctccaggccaaatggga
atcgatgacatgaagatgctggagcagaaagcacagcagcttgctgcagaggctgagcag
gacaaaccaaagcccaaagagaagattctctttgtcaggagtgacacctctcgcagtgag
ttggctgaactttccaaacaagccaatcctgatgagattgacattgatgatgatgacgac
gacgacgaagaccagggaccagatgaggtgcctcttgaacagaagagtgtccccacagct
gtgtttggagggctgaaagatgactga
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