Pempheris klunzingeri: 139217633
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Entry
139217633 CDS
T11454
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pklu Pempheris klunzingeri
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pklu03041
]
139217633 (ddx1)
03016 Transfer RNA biogenesis [BR:
pklu03016
]
139217633 (ddx1)
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139217633 (ddx1)
Spliceosome [BR:
pklu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139217633 (ddx1)
Transfer RNA biogenesis [BR:
pklu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139217633 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
139217633
NCBI-ProteinID:
XP_070705106
LinkDB
All DBs
Position
18:complement(9163963..9171436)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMAEIAQAVEELDWLLPTDIQSESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKASIKTGGAIFNNWQMNPYDRSAAFAIGPDGLCCQSREFKEWH
GCRSTKAVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDYIGCYLDLDKSQISFSKNGNDLGVAFDIPQHTKSQPFFASCVLKNAELKF
NFGGEDFKYAPKSGFVALNQAPEAHAVKSSQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNIKQFKKYVDNPKLRELLVIGGVAAKEQLAALEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVMDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDHLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVKAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQL
SCVCLHGDRKPNERKNNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRALGGGSYKGHVDVLAPTVQELANLER
EAQSSFLHLGYLPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatggccgaaatcgcgcaggctgtggaagagctg
gactggctgctaccaactgacatccagtcagagtccattccccttattcttggtggagga
gatgtacttatggcagcagaaactggcagtgggaagacaggtgcctttagtatcccagtg
atccagattgtgtatgagactctgaaggaccagcaggagggcaagaagggcaaagcctct
atcaagaccgggggagccattttcaacaattggcagatgaacccttatgaccgcagtgca
gcctttgcaataggtccagatggattgtgctgccagagcagggagtttaaagagtggcac
ggctgccgctctacaaaagctgtcaccaaagggaagtattactatgaggtgacctgccat
gaccagggtctgtgtcgcattggctggtccaccagtcaggcagccctggacttgggaact
gataagtacggttttggttttggtgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgactatattggctgctacctggatctagacaag
agccagatctccttctctaaaaatggaaacgacctgggtgtggcttttgacatccctcaa
catacgaagagtcagcctttctttgcctcctgcgtgctcaagaatgcagagctgaagttc
aactttggaggagaagactttaaatacgccccaaagagcggttttgttgccctgaaccag
gcaccagaggctcacgcagtcaaatcctctcagacaggcagcgccaaagtgagtcaggtg
aaagcctcatccaacgcacccaaagccctgatcatcgagccatctaaagaattggctgaa
caaaccctcaacaacatcaagcagtttaaaaaatatgtggataaccccaaactcagagag
ctgctggtgattggtggtgtggctgccaaagagcagctggcggctctggaacagggggtt
gacatcgtggtgggaacacctggcagactggatgacctcatatccactgggaagctcagt
ctgtcccaagtccgctttctagtgatggatgagtgtgatggcctactgtctgcaggctat
acagactttatcaacaggatccataaccaaatccctcaggtcacctctgacggcaagaga
ctgcaggtgattgtgtgttcagccacgctgcactcctttgacgtaaagaagttgtctgag
cgcatcatgcactttcccacttgggttgacctgaagggagaggactctgttcccgagacc
gtccaccacgtagtggtgcctgtcaaccctaagagcgaccatctctgggagcgtctgggc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagaccaggagccaat
tctgcagaaatgtggtctgaagccatcaaggtgctgaagggcgaatacacagtgaaggcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagatcgattgtgac
aacatggaacagtatttcatccagcaaggaggaggtccagacagtaaaggtcaccagtta
tcctgtgtttgtctccatggtgatcgaaagcccaatgagcggaaaaataacctggagcgc
ttcaagagaaaagaagtgaggctcttgatctgcactgatgtagctgccagaggaattgac
atccacggtgttccttatgtgattaatgtcaccctaccagatgagaagcagaactatgtc
catcgtatcggcagagttggaagagccgagagaatgggactggccatctccttggttgcc
atggaaaaggagaaggtgtggtaccacgtttgtgcgaaccgaggcaggggctgctacaac
acccgtcttaaggaggatggaggttgcaccatctggtacaacgagaaagagctgctgtca
gagatcgaggagcatctaaagtgcaccatcacacagtgtgagccagacatcaaagtccca
gtggatgattttgatggaaaagtcacctatggtcagcgcagggcattgggaggtggaagc
tacaagggtcacgtggatgttctggcaccaacagtccaggagctggcaaacctcgagaga
gaagcccaatcttccttcctccacctgggatacctgccaaatcagctcttccgagcattc
tga
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