Pempheris klunzingeri: 139219651
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Entry
139219651 CDS
T11454
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139219651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pklu03041
]
139219651
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139219651
Spliceosome [BR:
pklu03041
]
Complex C
Other components
Step II factors
139219651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
Flavi_DEAD
AAA_19
ABC_tran
nSTAND3
T2SSE
AAA_16
TsaE
Sigma54_activ_2
PhoH
AAA_7
NB-ARC
Cas3-like_C_2
AAA_30
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
139219651
NCBI-ProteinID:
XP_070707683
LinkDB
All DBs
Position
20:4004252..4013369
Genome browser
AA seq
1193 aa
AA seq
DB search
MAALDEIQRLEYLSLVSKVCTELENHLGISEKDLAEFIINLAEKHPTFEDFKAALCKNGA
DFTDTLTGNLLRLIHTMRALPSTSKAHQAKVKPKSEKDKLKEKYPALCKPDDPAWVIPSP
HTNKDDEQVAAAAMKELEMLMPNFCGTSSDNRSNANLHSDRGRNTDKESGRQRSRSRSRS
RDRDGESNPKRRRKRVSRWSDRPPSPHKDDDDNNNNNKDDKGSDCWRDRFVDRPLVEEPV
VGDIYSGKISSIMQFGCFVQLEGLRKRWEGLVHISELRKEGRIANVADVVTKGQKVKVKV
LSFTGTKASLSMKDVDQETGEDLNPNRRRNLDVGVGDEAMRNPDRPVEASVLEIEENPTE
RKRLAKITDLEKWEIKQMIAANVLPKEEFPEFDEETGILPKIDDDEDEEMDIDLVEEEPP
FLRGQTKWTANLSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAARAAEMDSIPTGLNK
HWIDPMPDYEGRQIAANMRGIGAMPLDLPAWKRYAFGGNQVSYGKKTELSILQQRESLPI
FKLKEQLVQAVHDNQILIVVGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVA
KRVSEEYGCRLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRECLLDPDMSQYCLIMLDEA
HERTIHTDVLFGLLKKTIQKRKDLKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEIL
YTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPDVPEL
IILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVYNS
KTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLVSNVPEIQRTNLAS
TVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEP
MLCKMLIMSVHLGCSEEMLTIVSMLSVQNIFYRPKDKQALADQKKTKFFQLEGDHLTLLA
VYNSWKNNKFSNPWCFENFIQARSLKRAQDIRKQMLSIMDRHKLDVVSCGKATMRVQKAI
CSGFFRNAARKHPHDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVTT
IDPRWLVEFAPAFYRVGDPTRLSKQKRQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttagacgaaatacaacgtcttgaatatttatctttggtgtcaaaggtgtgc
acggagttggagaatcatctggggataagcgaaaaagatttggctgaatttatcatcaat
ctggccgaaaaacatccaacatttgaggatttcaaagcggctctgtgtaaaaatggagca
gattttacagataccctcactggtaatctgcttagacttatccacactatgcgagccttg
ccatctacaagtaaagctcatcaggcaaaggtcaaaccaaagagcgagaaagacaagctg
aaagagaaataccctgcattatgtaaaccagatgatcctgcatgggtgattccatcgcct
cacacaaataaagatgacgagcaggttgctgcagccgccatgaaggagctggagatgctc
atgcctaacttctgtgggacaagctctgataacaggtcaaacgcaaatttgcacagtgac
cgaggtcgaaacacagacaaagaaagcggacgtcagcgaagccgttctcgctccaggtca
agggatcgcgacggagaatcaaaccccaagcgaagaaggaaacgggtgtcacgctggagc
gaccggccaccgagcccacacaaagatgatgacgacaacaacaacaacaacaaggatgac
aaaggctctgactgctggcgggacagatttgtggatcgtcctctggtagaagagcctgtt
gtgggcgacatctacagtggcaaaatcagcagtattatgcagtttggctgctttgtgcag
ttagagggcctcagaaaacgctgggagggcctggtgcacatctcagagttgcgcaaagaa
ggacgtatagccaatgtggctgacgtggtcaccaaaggtcaaaaggtgaaggtcaaagtg
ctgtcgttcaccggaaccaaagccagccttagcatgaaggatgttgaccaggagacaggc
gaggacctgaaccccaaccggagaagaaacctggacgtgggagttggagacgaagccatg
aggaaccctgaccggcctgttgaggccagcgtgctggaaatagaggaaaacccaacagaa
cgcaaacggcttgccaagataactgaccttgaaaaatgggaaataaaacagatgatcgca
gccaacgtacttcctaaagaagaattcccagaatttgacgaggagactggaatcctcccc
aagatagatgatgatgaagatgaagaaatggacattgacctggttgaagaagaaccacca
ttcctgaggggacagactaaatggactgcaaacctcagcccagtcaaaatagtaaagaat
ccagacggctccctttcccaggcagccatgatgcagagtgctcttgctaaggagagaaga
gaggtgaagcaggcggctcgcgctgcagagatggactccatccccaccggcctcaacaag
cactggattgacccaatgcctgactatgaaggaaggcagatcgctgccaacatgagaggc
atcggcgcaatgcctctagatcttccagcgtggaaaagatatgccttcggagggaaccag
gtgtcatatggcaagaagacagaactttccatcctgcagcagagagagagcctgcctatt
ttcaagcttaaagaacagctcgttcaggctgtccatgataatcagatcttgattgtcgtt
ggagaaactgggtctggaaagaccacgcagatcacacagtacctggcagaggcaggttac
acctcccggggtaagattggttgtacgcagcctcgtcgtgtagctgctatgtctgtagcc
aagagggtctctgaggagtacggttgccgtcttggccaggaggtgggttacaccattcgt
tttgaggactgcaccagcacagagacagtaatcaagtacatgacccatggtatgctgcaa
agggagtgtctgttggacccagacatgagtcagtattgcctcattatgctagatgaggcc
catgagagaacaatccacaccgatgtgctctttggccttctcaagaagacgatacagaaa
cgcaaagacctgaagctgatcgtgtcctcggctacactggatgcggtcaaattctcccag
tatttctttgaagcgcccatcttcaccatcccaggaagaactttcccagtggagattctc
tacaccaaagaacccgagacagactacctggacgccagcctcatcaccgttatgcagatc
catctaacggagcccccaggtgacgtcctggtgtttctgactggacaggaagagatcgac
acggcctgtgagatcctgtatgagagaatgaagtcactggggcctgatgttcctgagctc
attattctgcccgtttattctgccctgcccagtgagatgcagaccaggatctttgaccct
gcacctccaggcagcagaaaggtcatcattgccacaaacattgctgagacttctctgact
attgatgggatctactatgtggtggaccctggctttgttaaacagattgtgtataattcc
aagacgggaatcgaccagcttgtggtgactcccatatcacaggcgcaggccaagcagagg
gcaggtcgagccggcagaacaggcccagggaagtgctacaggctctacactgagagagcc
tacagagacgagatgcttgtgtccaatgtgccagagatccagaggaccaacttggccagc
actgtgctgtcgctcaaggccatgggtatcaacgacctgctgtcttttgacttcatggac
gctcctcccatggagactctgatcacagccatggagcagctctacactctgggggctctg
gatgatgagggcctcctcacacggctgggaagaaggatggctgagtttcctctggagccc
atgctgtgtaagatgttgatcatgtccgtccacctgggctgcagtgaagagatgctcacc
atcgtctccatgttgtctgtgcagaacatcttttacagaccaaaggacaaacaggcgctt
gccgaccagaagaagacgaagttcttccagctcgagggggaccaccttacattactggct
gtctacaactcctggaagaacaataagttttccaacccctggtgtttcgagaacttcatc
caagcccgctccttaaagagagctcaggatatacgcaagcagatgctcagcatcatggac
agacacaagctggatgtggtgtcttgtggaaaagctacaatgcgggtccagaaagctatt
tgcagtggattcttcaggaacgccgccaggaagcatccccatgatgggtaccgtaccctg
atagaccagcaggtggtgtacctccacccctccagcaccctcttcaaccgccagccggaa
tggcttgtttatcacgagctggtgctgaccaccaaggagtacatgcgagaggtgaccacc
atcgaccctcgctggctcgtggagtttgcgccggctttctacagagttggcgaccccaca
cgcctcagcaagcagaagaggcagcagaaactggaacctctctacaaccgctatgaggaa
cccaacgcttggaggatctcccgcgccttcagacgacgctga
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