Pempheris klunzingeri: 139222052
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Entry
139222052 CDS
T11454
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pklu Pempheris klunzingeri
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pklu03016
]
139222052 (rtcb)
Enzymes [BR:
pklu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139222052 (rtcb)
Transfer RNA biogenesis [BR:
pklu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139222052 (rtcb)
Prokaryotic type
tRNA splicing ligases
139222052 (rtcb)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139222052
NCBI-ProteinID:
XP_070710122
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Position
22:complement(896577..902998)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISSNCWRIKKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDLNDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIMS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaacgatgagctgcagtacctggacaagatcagcagcaactgctgg
aggatcaaaaagggttttgttcccaacatgcaggtcgaaggaaacttctacgtgaacgat
tccctggagaagctgatgtttgaggagctccgtaacgcctgtcggggaggaggcatcggt
gggttccttccagccatgaaacagatcgggaacgtggcagcgctgcccgggatcgtacac
aggtccatcggcctcccagatgttcactctggttatggatttgctatcggaaacatggcg
gccttcgacctgaacgacccggacgctgtggtgtctccaggcggcgtcggtttcgacata
aactgcggcgtccgtctgctgaggacgaacctggacgagggggacgtgcagccggtgaag
gagcagctggcccagtcgctgttcgaccacatcccagtgggggtcggatccaagggggtc
atccccatgggggccaaggacctggaggaggccctggagatgggggtggactggtccctg
agggagggctatgcctgggccgaggacaaggagcactgtgaggagtacggcaggatgctg
caggccgaccccaacaaagtctcctccaaggccaagaagagaggcctgccgcagctcggg
actctgggagcaggaaaccactacgctgagatccaggtggtggatgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgtgtgatgatccacagc
ggcagcagaggcctcggacaccaagtcgccacagacgctctggttgccatggagaaggcg
atgaagagagataagatcatcgtgaacgaccgccagctggcgtgcgcccgcatcatgtcc
caggaggggcaggactacctgaaggggatggcggcggccgggaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttttccaaagtgttcgccaccacgccg
gacgacctggacatgcacgtcatctacgacgtctctcacaacatcgccaaggtggaggag
cacatggtggacgggaagcagaggacgctgctggtgcaccgcaaaggctccacccgcgcc
ttccccccgcaccaccccctcatccccgtggactaccagctgacggggcagccggtgctg
atcggagggacgatgggaacctgcagctacgtcctgacggggaccgagcagggcatgacg
gagacgttcggcaccacctgccacggagcgggtcgcgctctgtctcgggcgaagtctcgc
aggaacctggacttccaggacgtcctggacaaactggccgacaaaggcatcgccatccga
gtggcgtcgcccaaactggtcatggaggaggctcctgaatcgtacaaaaacgtgacggac
gtcgtcaacacgtgtcacgacgctggaatcagtaagaaggcgatcaaactgaggccgatc
gctgtgattaaaggctga
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