Pempheris klunzingeri: 139222751
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Entry
139222751 CDS
T11454
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pklu Pempheris klunzingeri
Pathway
pklu04382
Cornified envelope formation
pklu04510
Focal adhesion
pklu04512
ECM-receptor interaction
pklu04518
Integrin signaling
pklu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139222751 (col4a5)
04518 Integrin signaling
139222751 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139222751 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139222751 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139222751 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pklu04147
]
139222751 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pklu00536
]
139222751 (col4a5)
Exosome [BR:
pklu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139222751 (col4a5)
Glycosaminoglycan binding proteins [BR:
pklu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139222751 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139222751
NCBI-ProteinID:
XP_070710702
LinkDB
All DBs
Position
23:3377393..3423273
Genome browser
AA seq
1678 aa
AA seq
DB search
MNKDLKSLRQLAVPLLFLVLCVAVQRSDSKACTGKNDCNGEKGEKGERGFPGLPGQPGVP
GFPGPEGPIGSRGEKGSDGPQGTTGAKGIRGPPGLPGFPGTPGLPGLPGHDGPPGPRGVA
GCNGTKGDRGLPGSGGIPGQQGLTGPPGLPGSKGDPGDVISANRFGDKGTVGLPGPPGSP
GSSGPPGLQGPLGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGEKGEPGLPGPPGPPG
QVGEQKRPPETEIQRGDKGDPGLPGPPGDSGFPGPPGPSGGQRGDKGEPGDPGKRGKPGK
DGDPGSPGFPGIKGESGQPGPPGRDGERGLKGDRGYPGPPGVVIGGQTGSQVGPKGEPGF
PGTPGLKGDRGPSGLTGPPGVPGIPAVGGGGQPGSPGFPGERGQKGDIGPPGLGLPGPPG
RSGSPGPSGQPGLPGPPGFSTAGQNCIPGVPGRPGLQGDRGYPGETGQKGDKGDTCVNCF
GGTDAIPGPPGAPGQPGFPGSPGATGIKGDRGFSGTPGAAGPPGPSGPSGSPGFPGEKGD
PGDAITVSGVRGEKGDTGFPGSPGLPGLDGRPGRDGQPGQPGPKGASGSLLVKGERGPPG
EPGGPGIPGDRGPPGSPGFGPQGSSGQKGDQGVSGRPGSSGPPGAKGEPGLSVAEKGLPG
PRGQDGEPGLPGAPGSSGQPGQNGFPGLPGAKGEPGLPGIGLPGPPGAKGFPGIPGQPGA
PAGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGAKGLSGPKGDSGFPGSPGSP
GQPGFDGAPGPKGEPGTPGVSGARGPPGSLALGSVGQPGPVGPPGPMGPPGFPGANGEKG
DPGPPGLDIPGLPGDRGSPGFPGSPGSSGLPGPPGGPGRDGLPGLPGQKGDMGPMGSPGP
SGGPGGPGGPGAPGFKGEAGFPGRDGVPGGPGGKGERGDPGVQGPPGASQPPSVTKGTKG
EPGLPGAPGLPGQKGIPGLTGDPGLSGSDGRPGLPGPSGPKGDSGIPGAPGGPGGPGAKG
SMGEMGFPGPSGQKGLPGQGGRPGSPGQPGGPGFPGAKGEPGSAGVGPPGQQGLKGEPGQ
PGFPGSPGLKGTPGSSGLPGLPGGSGAKGDPGLPGFQGAPGIPGPKGLDGGPGAPGLTGA
PGRPGESGRPGQPGLPGEKGQAGRDGIPGPSGVKGEPGLPGYGGPGASGLPGLPGAKGDP
GLPGPTGSSGFPGTKGEAGFPGSPGSPGNSGPPGPPGLALQGPKGLQGPPGPPGRAGGPG
PQGPRGPSGSGGVKGEKGIPGAPGQPGFPGQKGELGTPGFPGSSGLPGASGVKGDIGLSG
VPGFPGQKGDPGLPGGNGLPGDPGDIGSTGPPGDPGVPPTPIVVKGERGPTGPPGQPGGR
GLPGSPGREGLSGQPGEPGDAGLEGPPGFSGPSGRKGDNGPAGQPGQRGYPGPPGSDGPQ
GPPGPPGSVAAAHGFLITRHSQGQDVPFCPEGTNVIYDGYSLLYVQGNERAHGQDLGSAG
SCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPYISRCAVC
EAPAMVIAVHSQTIQIPTCPSNWDPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSA
PFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgctcttcctcgtcctg
tgcgtcgcggtgcagagatccgactccaaggcttgcactggcaaaaatgactgcaatgga
gaaaaaggagaaaagggtgagcggggcttcccaggtctccccggacagccaggcgtccca
ggattccccggacctgaagggccgattggatccagaggagagaagggtagcgatggacct
cagggaacaactggtgcaaaaggaataagagggcctcctgggttgccaggatttccagga
acgcccggacttccgggtctgcccgggcacgacggacctccaggccccagaggagtggcg
ggctgcaacgggacaaagggcgacaggggtctcccaggaagtggagggatccccggacag
caaggactgacaggtccacctggtcttccagggtcaaagggagacccaggcgatgtgatt
tccgccaaccggtttggagacaaaggaacagtgggcctgcccggaccgccaggatcccct
ggctcctccggacctcccggcttgcaaggtccactcggccctccaggacccagaggttat
gagggtcgtccaggtcctcccggtcttcccgggccaaaaggaaacatgggactgaacttc
caaggacccaaaggagagaagggtgaaccaggtttgccaggacctcctggtcctcccggg
caggtgggagaacagaagaggccgcctgagacggagatccagagaggagacaagggcgac
ccaggacttccaggacccccaggtgattcaggctttccaggcccccctggtccttcaggt
ggccagagaggagacaagggagaaccaggagatccaggcaagcgaggcaaaccaggcaaa
gacggcgaccctggttctccaggcttccccggaatcaaaggagaatcaggccaaccaggt
cctccaggcagggatggagagagaggactaaaaggtgatcgtggatacccaggcccccca
ggagtggtgattggtgggcagacaggaagtcaggtcggccctaaaggtgagcccgggttc
ccaggaacacctggactcaaaggagacagaggaccatcaggtttaacaggacctccagga
gtcccaggaattccagctgtcggcggtggtggtcagcctggatctccaggcttccccgga
gagagaggtcagaagggagacatcggccccccagggctgggtctgccaggccccccagga
cgctcggggtcacctggtccctcgggtcaaccagggctccctggacctccgggcttttca
acagcgggacaaaactgcatccctggagttcccgggcgtcccggcctgcagggagataga
ggttacccaggagagacgggccagaaaggagataaaggcgacacctgtgtgaactgcttt
ggcggcacagatgccatcccaggacccccaggagctccaggacagcctggatttccagga
tctcctggcgccacgggcattaaaggagacagaggattctcaggaacacctggtgctgct
ggaccacctggtccctccggtccttcgggttctccaggattccctggagagaagggagac
ccgggcgatgccatcacagtcagcggcgtgaggggagaaaagggtgacactggcttcccc
ggatcgcctggtctccccggtctggacggtcgacccggtcgtgacggacagcctggacag
cctggacccaaaggagcttctggctctctgctggtgaaaggagaacgagggccccccggt
gagcctggcggccctggtattccaggggacaggggtcctccaggatcccctggttttgga
cctcaaggatcttcaggacagaaaggtgaccaaggtgtctcaggacgacctggaagttcc
ggcccacccggtgctaaaggtgaaccaggcctgtcggtggctgagaaaggcttaccggga
cccagaggacaggatggtgaaccaggactgcccggcgcaccaggtagctcaggtcagcct
ggacagaatggtttccctggtttacctggagccaagggtgaacctggactcccaggcatt
ggactcccaggaccccctggagctaaaggattcccaggtatccccggccagccaggagct
cctgcaggaccgggcagaccaggagtagatggacttcccggccagcctggatttcctgga
cccaagggcgagcctggcttcggccttcctggccccccaggtttgccaggagtacctggt
gctaaaggtctctccggaccaaagggagattctggtttccctggcagccctggctcacct
ggacaacctggatttgatggcgctccaggacccaaaggtgagcccggtacacctggtgta
tctggagctcgtggcccacctggatccctggccctcggctcagtggggcaacccggccca
gttggaccccctggtccgatgggaccaccaggattccctggagcaaatggagagaaggga
gaccccggccctcctggtctagacatcccaggtctgccaggagacagaggatctcctggt
ttcccaggttccccaggatcaagcggtcttccaggacctcctggaggacctggacgcgat
ggcctgccaggattgccaggtcagaaaggagacatgggtcctatgggatctccaggaccc
tctggaggaccaggaggcccaggagggcctggcgctcctggatttaaaggtgaagctgga
ttcccaggcagagacggcgtacctggtggtcctggtggtaaaggagagagaggcgacccc
ggcgtccagggaccccctggagccagccagccgccatcggtcacaaagggaaccaaagga
gagcctggacttccaggtgcaccaggtcttccaggtcagaaaggcatccctggtctcacc
ggtgaccccggactctcaggatcagatggacgccctggactccccggaccatcaggaccc
aagggagattctggcatcccaggagctccaggtggtcctggaggtccaggtgcaaagggc
agtatgggagaaatgggatttccaggaccatcagggcagaagggtctgccaggtcaggga
ggtaggcctggatccccaggacagccaggaggacctggtttccctggagccaaaggtgaa
cccggctctgctggagttggaccacccggacaacagggactcaagggtgaaccaggccag
ccgggattcccaggttctccaggactgaagggaactccagggtcatctggtctcccaggt
ttaccaggcgggtccggtgccaaaggggaccccggcctcccaggattccaaggtgcgcct
ggtatccctggacctaagggtcttgatggtgggcccggcgccccaggtctcactggagct
cctggtagacccggagagtccggtcggccgggacaaccagggttgccaggagagaagggt
caggcaggccgggatgggatcccaggaccttctggagtcaaaggagagccagggcttcct
ggttatggtggtcccggtgcctcagggcttccagggttgccaggtgcaaagggagaccca
ggtcttcccggcccaactggcagttctggcttccccggcaccaaaggagaggctggtttc
cccggttcccctggttctccaggcaacagtggccctcctgggcctccaggactggctctg
cagggccccaaaggactgcaaggaccccctggaccacctggaagagcaggtggacctggc
ccacagggcccccgtgggccttcaggaagcggtggcgttaagggagagaagggcattccc
ggggctcctgggcagccaggcttccccggacagaagggagaattaggtactcccggattc
ccgggttcctcgggtcttcctggtgcttctggcgtgaagggagacatcggtcttagtggt
gttcctggatttcctggacaaaagggagacccaggactccccggcggtaacggcctccct
ggtgatcctggagatatcggctccactggccctcctggtgaccctggcgtacctccgact
cccatcgtggtgaagggagagcgtggacctactggtcctccgggccagcccggtggtcgg
ggattacctggttctccggggcgtgagggactttcaggtcagcctggtgaacctggggat
gctggtctggagggtcctcctggcttcagtggcccatctggtaggaagggagacaacgga
cccgctggtcagcctggtcagcgtggctaccctggtcccccaggttcagacggtccacag
ggtcctcctggccctccaggatcagtggctgcagcccacggcttcctcatcacccgccac
agccagggtcaggatgtgcccttctgtcccgaaggcactaacgtcatctacgacggctac
tccctgctgtatgtgcagggcaatgagagggcacacggacaggaccttggctcggccggc
agctgtctacgcaggttcagcaccatgcccttcatgttctgcaacatcaacaacgtctgc
aacttcgcctcccgcaacgactactcctactggctgtccacgcctgagcccatgcccatg
tccatggcgcccatcaccggagagagcatcaagccttacatcagcaggtgtgcagtgtgt
gaagctccagccatggtgattgcagtgcacagtcagaccatccagattcctacttgccct
tcgaattgggaccctctgtggataggatactccttcatgatgcacaccagcgcgggtgca
gagggctccggtcaggccctggcctcccccggctcctgcctggaggagttccgcagcgct
cccttcatcgagtgccacggcagagggacgtgcaactactacggcaactcctacagcttc
tggctggccactgtggagccctctgagatgttcaggaagccccagtcggagaccctcaag
gcgggaaacctacggacgcgcgtcagccgctgcgtcgtctgcatgaagaggacgtaa
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