Pempheris klunzingeri: 139225593
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Entry
139225593 CDS
T11454
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139225593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pklu03041
]
139225593
03009 Ribosome biogenesis [BR:
pklu03009
]
139225593
Enzymes [BR:
pklu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139225593
Spliceosome [BR:
pklu03041
]
Complex A
U2 snRNP components
U2 related factors
139225593
Complex B
139225593
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
139225593
Ribosome biogenesis [BR:
pklu03009
]
Eukaryotic type
90S particles
Helicases
139225593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Cas3-like_C_2
Flavi_DEAD
AAA_29
nSTAND3
nSTAND_NTPase5
AAA_7
Motif
Other DBs
NCBI-GeneID:
139225593
NCBI-ProteinID:
XP_070712477
LinkDB
All DBs
Position
3:complement(12015450..12023942)
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDPKPSPVP
SNSTVAVPCVVPIKQMAMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtctggatttaggggatgactactcctccagtaagaagaggtct
gaagggagggacagggaccgtgacagagaccgcgaggaccgttccagggacagggaccga
gatagggaccgagacagggacagagaccgggacagagacccgaagccttctcccgtcccg
tctaacagcacggtggctgtgccatgcgtggtacccatcaagcagatggccatgcatcag
cagatcaacccgttcaccaacctgccgcacacgccgcgctactacgagatcctgaagaag
aggttacagcttccagtgtgggagtacaaggaaagcttcagtgatatcatcacacggcat
cagagcttcgtccttgttggagagacaggctctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgaggggtttgcctggccctaagcgggcagtagcctgcactcagcct
aggagagtggcagctatgagcgtggctcaaagagtggcagacgagatggacgtcatgctt
gggcaggaagtcggctactccattcgatttgaggactgtagctctgccaagactatactt
aagtacatgacagatggtatgttactaagagaggcaatgaatgacccgctgctggagcga
tatggtgtgatcattctggacgaggcccacgagcgaactctggccacagatatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccagatctaaaggtgatcgtcatgagtgcc
acgctagacgccgggaagttccaggtgtacttcgacaactgtcctctcctgactattcct
gggcgtacacaccctgtagagatcttctacacccccgaaccagagcgagactaccttgag
gcagcgatccgtaccgtcatccagattcacatgtgtgaggaagatgaaggtgactgcctg
ctcttcctcactggtcaagaggaaattgatgaggcctgcaaacgaatcaagcgtgaggta
gatgacctcggacctgaagttggagacatcaaaatcattccactgtattccacattgcct
ccacagcaacagcaaaggatctttgagccgcctcctccaagaaagcccaatggtgcaata
ggaagaaaggttgtggtttcgacaaacattgctgagacctccctgacaattgatggtgtg
gtgtttgtcatcgatcctgggtttgccaagcaaaaggtttacaatccccgtatcagagtt
gagtctctgcttgtcacagccatcagtaaagcctctgcccagcagagggcagggcgagct
ggcaggacaaggccggggaaatgtttccgcctctacacagagaaggcctacaaaacagag
atgcaggataacacataccccgagattcttcggtccaacttgggatctgttgtgctgcag
ctgaaaaagctgggtattgatgacctcgtgcactttgacttcatggatccaccagctcct
gagacactgatgagggcccttgagctgctgaattacttggcagctctcaacgatgacggt
gacctgacggagctgggctccatgatggcagagtttcctttggacccccagctggctaag
atggtcatagccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaagctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctgaacgtctaccacgcc
ttcaaacaaaaccacgagtctaaccagtggtgctatgacaactttgtcaactaccgttca
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
ccccgccggagcacagagttcaccagcagagattactacatcaacatccgcagagcgctc
tgcaccggcttcttcatgcaggtggcacatttggagcgcacgggtcattacctcacagtg
aaagacaaccaagtggtccaactgcacccatctacagtcctggaccacaagcccgagtgg
gtgctctacaatgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatc
aaaccagaatggctggtgaagattgcaccccaatactatgaaatgagtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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