Pseudomonas kermanshahensis: PZ739_02340
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Entry
PZ739_02340 CDS
T08964
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PZ739_02340 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkm03021
]
PZ739_02340 (rpoC)
03400 DNA repair and recombination proteins [BR:
pkm03400
]
PZ739_02340 (rpoC)
Enzymes [BR:
pkm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PZ739_02340 (rpoC)
Transcription machinery [BR:
pkm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PZ739_02340 (rpoC)
DNA repair and recombination proteins [BR:
pkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PZ739_02340 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WEL56023
LinkDB
All DBs
Position
540723..544922
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGSVTKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVVRADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLASEDKFISKFSRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggccaactgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggaacacgagatcggtcgc
ctgcgtgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaaactgatggaagcgttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtactgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctcgaactgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaggtcatccgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgttcgagcctgtg
ctcatcgaaggtaaggcgatccagctgcacccgttggtctgtgcggcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtattcgcagacctgcaagaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaatgaccgtgat
ggctccgtcaccaagaacacccgcatcgtcgacaccaccgtcggccgtgcgctgttgttc
caggttgtaccggcaggtctgccgtacgacgtggtcaaccagccgatgaagaagaaagcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtcatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatttccggcgtttcgatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtactgctaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcacagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcgctgaaaactgcgaactccggttacctgacgcgtcgtctg
gtggacgtggcgcaagatctggtcgtgaccgagatcgactgtggcaccgaccacggcctg
ctgatgactccgcacatcgaaggcggtgacgttgtcgagccgctgggtgagcgcgtactg
ggtcgtgtcattgcccgtgacgtgttcaaaccaggcacagaggacgtcatcgtcccagcc
ggtaccctggttgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtt
atcgtgcgttcgccgatcaactgcgaaacccgctacggtatctgcgccaagtgctacggt
cgtgacctggctcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagttgaccatgcgtacgttccacatcggtggtgct
gcaagccggacctcggctgccgacagcgtccaggtgaagaacggcggtatggttcgtctg
cacaacctgaagcaggtcgtgcgcgccgatggcaacctggttgccgtatcgcgttccggc
gagctggccattgccgatgaattcggtcgtgagcgtgagcgttacaagctgccttacggt
gcggtcatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgacgaactgactggtttgaccaacatcgaa
gttctggacgtcaaggaccgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgatgccaacggcaaggacctgtacctgccaggtaccgacgtaccggctcagtacttc
ctgccggccaacgcccttgttggtgtggctgacggtgcacagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattacgccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgcctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatcgccgagtcgggtgattccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtcgagaacgagcgtctcgccagcgaagacaagttcatctcg
aagttctcgcgtgtgctgctgggtatcaccaaggcgtcgctgtcgaccgaatcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggctgtcaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
actggtctggcttaccacagcgagcgcaagcgccgccgtgatgccgacaaaccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaattccagcggtaactaa
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