Pseudomonas kermanshahensis: PZ739_02770
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Entry
PZ739_02770 CDS
T08964
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pkm
Pseudomonas kermanshahensis
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pkm03016
]
PZ739_02770
Enzymes [BR:
pkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PZ739_02770
Transfer RNA biogenesis [BR:
pkm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PZ739_02770
Prokaryotic type
tRNA splicing ligases
PZ739_02770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WEL58205
LinkDB
All DBs
Position
617435..618649
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AA seq
404 aa
AA seq
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MDSMDILQVAGGKPIKLWTDGVPVEDEARQQLLNTAKLPFIFKHLAVMPDVHLGKGSTIG
SVIPTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRTAIEQAVPHGKTFGRHDQ
GAWDNVPAKADKRWGTLATRFKAITDKYPRLEKTNNRHHLGTLGGGNHFIEVCLDEADRV
WFMLHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQ
DFARQNRELMMLAVVAATRKVLGRPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAVSA
QKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRVMSRTRAKSRFTVEDQRRATAHV
ECRKDKAVIDEIPMAYKDIDAVMHAQRDLVEVVHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atcgacagcatggacattctccaggtcgccggcggcaagccaatcaagttgtggaccgac
ggcgtgccggtcgaagacgaagcgcgccagcagttgctgaacacggccaaattgccgttc
atcttcaagcacctggccgtgatgccggatgtgcacctgggcaagggctcgaccatcggc
agcgtaatccccaccgttggcgcgatcatccccgccgccgttggcgtggacatcggctgc
ggcatgatcgccgcgcggacttcgctgcatgcccgcgacctgcccgacaacctgcacggt
ttgcgcacggcgatcgagcaggccgtgccccatggcaagaccttcggccgccacgaccaa
ggcgcctgggacaacgtgccagccaaggctgacaaacgctggggcacgctggccacgcgc
ttcaaggccatcaccgacaagtacccgcggctggagaaaaccaataaccggcatcacctg
ggcaccctgggcggcggcaatcacttcatcgaggtttgcctggacgaggccgaccgcgtg
tggttcatgttgcacagtggctcgcgtggcgttggcaatgccatcggcaacctgttcatc
gaactggcccaggccgacatgcgccagcacctggccaacctgccggacaaggacctggcg
tacttcgaggaaggtagccgccactttgccgactacgtcgaagcggttgagtgggcgcag
gattttgcccggcagaaccgcgaactgatgatgctggcagtggttgccgcgacccgtaag
gtgcttggccggccgttcgaggccagcctggaggcggtgaactgtcaccacaactatgtg
cagcgcgaacagcatttcgggcgcgaagtgctggtgacgcgcaagggcgcggtgtcggcg
cagaaagggcagttgggcatcatccccggctcgatgggggcaaagagtttcattgtgcgc
gggttgggcaacgaagaggcgttctgctcttgcagccatggggccgggcgggtgatgagc
cgaacccgggccaagagccgcttcactgtggaagaccagcgacgggccactgcgcatgtg
gagtgccgcaaggacaaggcggtgatcgatgagataccgatggcctacaaggacatcgat
gcggtgatgcatgcgcagcgcgacctggtggaggtggtgcacacgctgcgccaggtggtg
tgtgtgaaggggtga
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