Pseudomonas kermanshahensis: PZ739_05380
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Entry
PZ739_05380 CDS
T08964
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03410
Base excision repair
pkm03430
Mismatch repair
pkm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PZ739_05380 (recJ)
03430 Mismatch repair
PZ739_05380 (recJ)
03440 Homologous recombination
PZ739_05380 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkm03400
]
PZ739_05380 (recJ)
DNA repair and recombination proteins [BR:
pkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PZ739_05380 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PZ739_05380 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PZ739_05380 (recJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
WEL56602
LinkDB
All DBs
Position
1195606..1197315
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AA seq
569 aa
AA seq
DB search
MRIEPRPLPSTLPLLGNLPPLLTRLYAARGVQTEAELDKSLARLLPYQQLKGIEAGVDLL
VEALDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEFGYGLTPEIVDV
ALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCDF
PSKSLAGVGVIFYVLMALRARLRSLGRYDTQAQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAQEMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGG
HAMAAGLSLPEGNFPAFAEAFDQEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgtcccctgccgtcgaccttacccttgctgggtaacctgccaccc
ttgttgacccgtctgtatgccgcccgcggcgtgcagaccgaggccgaactggacaaaagc
ctggcgcggctgttgccgtaccagcaactcaaaggcatcgaggcgggggtagacctgctg
gtcgaagccctcgaccagcgccagcgcattcttatcgtcggcgacttcgacgccgacggt
gccactgccagcaccgttggcgtgctgggcctgcgtttgctgggcgcggcgcacgtcgat
tacctggtgcccaaccgcttcgaattcggctatggcctgacgccggagatcgtcgacgtc
gcactgcagcgccagccgcagttgctgatcaccgtcgacaacggcatctccagtgtcgat
ggcgtggcggcagccaaggcggcggggctcaaggtgctggtcaccgaccaccacctgccg
ggtgaacaattgcctgacgccgatgcgatcatcaacccgaaccagccgggctgtgacttc
ccgagcaagtcgctggccggggtcggggtgatcttctatgtgctcatggccttgcgcgca
cgcctgcgcagcctggggcgctacgacacgcaagcacagccgaacatcggcgaactgctc
gacctggtggcgctgggcagcgtcgccgacgtggtgccgctggacgccaacaaccgcatc
ctggtgcaccagggcctcgaacgcattcgcgccggccgcgctcggccagggctcaaggcg
attcttgaggtggcccgccgtgatcaccggcgcatcacctccaccgacctgggcttcatt
cttggcccgcgcttgaacgcggctggacgcttggacgacatgagcctgggcatcgaatgc
ttgttgtgcgaagacgccgccctggcccaggaaatggcccagcagctggacgacctcaac
caggaccgcaagtctatcgagcagggcatgcagcgcgaggcgctggcccagctcaaggac
ctgcccgtcgaatcgatgccgtacggcttgtgcctgttcgatgccgactggcaccaaggc
gtgatcgggatccttgcctcacgcttgaaggaacgttatcaccggccaactattgccttt
gccgatgccggcgacggcatgctcaagggctcggcacgttcggtgccgggttttcatatc
cgcgatgcgctggatgcggtggcggcgcgccatccgcagttgatcagcaaattcggcggg
cacgccatggccgccgggttgtcgttgcctgaaggcaacttcccggcattcgccgaggcg
tttgaccaggaagtgcggcgccagctgcgcgaagaagacctcaccggccggcttctttcg
gatggcagtctggccgtggaagagtttcacctcgacctggccaaggccttgcgccacgcc
gggccatgggggcagcacttcccagagccgttgttccatggtgtgtttcagctggtcgag
cagcgagtggtcggcgagcggcacctgaaagtggtgctcaagagcgaatgtggctcggtg
aggcttgatggcattgccttcggcgtcgaccgcgaggtgtggccgaaccctaccgtgcgt
tgggtggagctggcgtacaagctggatgtgaacgagtttcgcggtaatgagagcgtgcag
ttgatgattgcccacatggagccgcgctga
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