Pseudomonas kermanshahensis: PZ739_07430
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Entry
PZ739_07430 CDS
T08964
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZ739_07430 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkm03019
]
PZ739_07430 (rne)
03009 Ribosome biogenesis [BR:
pkm03009
]
PZ739_07430 (rne)
Enzymes [BR:
pkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PZ739_07430 (rne)
Messenger RNA biogenesis [BR:
pkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PZ739_07430 (rne)
Ribosome biogenesis [BR:
pkm03009
]
Prokaryotic type
rRNA processing factors
PZ739_07430 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WEL56991
LinkDB
All DBs
Position
complement(1628779..1631988)
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSMDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNLSSYEIAATETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSTV
EEPQQPAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPVAAPAVTAEKPAAERTPRNEE
RRNGRQQTRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERQP
RQPREDRRGNREERPVRELREPLEATPAPAAREERQPREERVAREERAPREERAPREERA
PREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRASEEATEQAAELA
EEQLPNEELLQDEQEGADGERPRRRSRGQRRRSNRRERQRNANGELIEGSEDDGSEEQPQ
QHQASELGAELAAGLAVTAAVASSSISADAEAQANQQAERATAEVAETDTREVAKPAEQV
EAVAQAEEVAIAPVVEQPVSEPVVVEATAEPVVEVAPQPVVEEAAAAEPAVVAEAPAEAA
AVEAGEIEKAPAFIEQAPVIEAPAPVVEAQPEVVVEPAPAAVEPAPVEAPAAVETATVML
ANGRAPNDPREVRRRKREAEAAAKAAQEAAASTQETALETADEHKPHHG
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgcctctacgacctggacatcgagtccggcgcccgtgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacctagcctcgaagccgccttcgtcgacttc
ggctctgaacgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaag
tcccccgaaggccgcgtcaacatcaaggacgtcctcagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccacctttatcagcctg
gccggccgctacctggtgctgatgcccaacaacccacgcgctggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctcaacggcctgaccgtgccgggc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcaatgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcctcccttgaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatggacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgagagccagatcgagaccgccttccagcgcgtcgtc
gacctgccgtccggcggttcgatcgtgatcgacccgaccgaggccctggtctccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaagaaatcgcccgccaactgcgtctgcgtgatatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagcgtgtg
cgtgagtgcctcgaagccgaccgcgcccgcgttcaggttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctcgggtaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagcgctgaaggaccgcactgccgaagtgcgcgcccaggtg
ccgatcccggtcgcggctttcctgctgaacgagaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcacgcatcatcatcctgccaaacgatcacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaacctgtccagctacgag
atcgccgccaccgaaaccgaagaagcgccgcagccgaccgccacccgtacgctggttcgc
caggaagccgcggtcaagactgccccggcccgcgccaacgcgccggtgccgagcactgtc
gaagagccgcagcagcctgccgcaccggtagccccagcgccaagcgccccagagccaagc
ctgttcaaaggcctggtcaagtcgctggtcagcctgttcgccggcaaggacgaaccggtc
gccgcaccggccgtcactgccgaaaaaccagccgccgaacgcaccccgcgcaacgaagag
cgtcgcaacggccgccagcagacccgcaaccgtaacggccggcgcgatgaagagcgcaag
ccacgcgaagagcgtgccgagcgcgccccacgcgaagagcgtcagcctcgcgaagaacgc
gcgccacgtgaagaacgtgccccgcgtgaagaacgtgcaccgcgcgaagagcgccaacca
cgtcagcctcgcgaagaccgtcgcggcaaccgcgaagaacgcccggtacgcgaactgcgc
gagccgctggaagccacgccggcacccgctgcccgtgaagagcgccagccacgtgaagag
cgtgtagcccgtgaagaacgcgccccacgcgaagagcgtgcaccgcgtgaagaacgtgcc
cctcgcgaagagcgcgcgccacgtgaagaacgtgctccgcgtgaagagcgtgccccgcgt
gaagaacgcgcaccccgcgaagaacgcgccccacgtgaagagcgtgccccacgcccaccg
cgtgaagagcgccagccacgtgccagcgaagaagccaccgagcaagctgcagagctggcc
gaagagcaactgccgaacgaagagctgctgcaagacgagcaggaaggcgccgatggcgag
cgtccgcgccgccgttcccgcggtcagcgtcgtcgcagcaaccgtcgcgagcgtcagcgc
aatgccaacggtgagctgatcgaaggcagcgaagacgacggcagcgaagagcagccacaa
cagcaccaggccagcgagctgggtgccgaactggctgccggcctggctgtgaccgcggct
gttgccagcagcagcatcagtgccgatgccgaagcccaagccaaccagcaggccgagcgc
gccaccgccgaagtcgccgaaaccgacacccgcgaagtcgccaagcccgccgagcaggtc
gaagccgttgcacaggccgaggaagtcgccatcgccccggtggtcgaacaacctgtcagc
gaacccgtagtggtggaagcgaccgccgaacctgtggttgaagttgcgccacagccggtc
gtggaagaagccgctgcggccgaacctgcagtggttgccgaagccccggcggaagctgca
gcggtcgaagccggtgaaatcgaaaaggccccggcctttatcgaacaagcaccggtcatc
gaagcacctgctccggttgttgaagcccagccggaagtggtcgttgagcctgctccagct
gcggtggagcctgcaccggtcgaagcacctgcggcggtcgaaaccgccactgtgatgctg
gcaaacggccgcgcgcctaacgacccacgtgaagtgcgtcgccgcaagcgtgaagccgag
gctgcggctaaagccgcgcaggaagctgctgcatcgacgcaggaaactgccctggaaacc
gctgatgagcacaaacctcatcacggctga
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