Pseudomonas kermanshahensis: PZ739_12425
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Entry
PZ739_12425 CDS
T08964
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PZ739_12425
09124 Replication and repair
03420 Nucleotide excision repair
PZ739_12425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkm03021
]
PZ739_12425
03036 Chromosome and associated proteins [BR:
pkm03036
]
PZ739_12425
03400 DNA repair and recombination proteins [BR:
pkm03400
]
PZ739_12425
Enzymes [BR:
pkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PZ739_12425
Transcription machinery [BR:
pkm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PZ739_12425
Chromosome and associated proteins [BR:
pkm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PZ739_12425
DNA repair and recombination proteins [BR:
pkm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PZ739_12425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
WEL57916
LinkDB
All DBs
Position
2779745..2782006
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHRRVVARRAADYESEVALEGQFES
LRVRGRADGYDPSCNRLEEIKTYRGDLARQPANHRQLHWAQAKVYAWLMCQARQLPAIEV
ALVYLDVDSDGQTLISEHHTAASLQAFFETQCRCFLAWAQRQQGRLAERDRDLQALGFPY
AQFRQGQRQLAETLYKAVSTGRCLMAQASAGIGKTLGTLFPLLKAMVPQQLDKVFFLTAK
TPGRALALDAMRQITDVTPQPALRTLELIARDKACEYPDKACHGESCPLAQGFYDRLPAA
REAAAGVPLLDRASLREVALAHQVCPYYLGQEMARWVDLVVADYNYYFDAHALLFGLAQA
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLLALRQSKPQGLIRALDRLNRQWNALYKE
QRAPYQASEQLPEAFIRALQQCIGLIQERMNQAPAEVDVQVLQFFYQALQFSRVAELFDE
HFIFDISQREGQRKRRLATLCLRNVTPARLLAPRMQAARSVTLFSATLSPRHFYSDLLGM
PADTAWLEVAAPFRAEQLEVRIASQVSTRYRERQASLAPIVALIAEQYQRMPGNYLAFFS
SFEYLQQVAGLLAERHADIPLWAQAAGMDEEARQAFLDRFVADGCGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDQGVLVLIDERFAEPRVQQMFPSWWRSGGA
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgagctacagcgtggcggtgcgtgccctgtgcgagttcagtgccaaggttggcgacctg
gacctgcgcttcaccccgtcgcccacggcccaggaaggcatcgaggggcaccgtcgcgtc
gtggcgcggcgtgcggccgattacgagtcggaagtggccctggagggccagttcgaaagc
ctgcgggtgcgaggccgggccgacggttacgaccccagttgcaaccgtttggaagagata
aagacctaccgcggcgaccttgcgcgccagccggccaaccatcgccaactgcactgggcc
caggccaaggtctacgcctggttgatgtgccaagcgcggcaattgccggccatcgaagtg
gccctggtgtacctggacgtggacagcgacggccagacgctgatcagcgagcaccacacg
gctgcctcgctgcaagcgttcttcgaaacccagtgccgctgctttctggcttgggcgcag
cgtcagcaaggccgactggccgagcgtgaccgcgatctgcaggcgctggggtttccctat
gcgcaattccgccagggccagcggcaattggccgagaccctgtacaaagccgtcagcacc
ggccgctgcctgatggctcaggccagtgccggtatcggcaagaccctgggcaccttgttc
ccgttgctcaaggcgatggtgccgcagcagctcgacaaagtgttctttctgacggccaag
acgccgggccgggcgctggccctcgatgccatgcgccagatcaccgatgtcacgccgcaa
ccggccttgcgcaccttggagctgatcgcccgcgacaaggcctgcgagtaccccgacaaa
gcttgccatggcgagtcctgcccgttggcgcaaggcttctacgaccgcctgcccgccgcg
cgcgaggctgcagcaggggtgccgttgctggaccgtgccagcctgcgcgaggtggccttg
gcgcatcaggtttgcccttattacctgggccaggaaatggcccgctgggtcgacttggtg
gtggccgattacaactattacttcgatgcccatgccttgctgttcggcttggcccaggct
aaccaatggcgggtggcggtgctggtggacgaagcgcacaacttggtcgagcgcggtcgc
ggcatgtacagcgccagccttgatcaaggccagttgctcgccttgcgccagagcaaaccc
caagggctgattcgtgcgctggaccgcctcaaccggcagtggaacgcgttgtacaaagag
cagcgtgcaccgtatcaggccagcgagcagttgccggaggccttcatacgcgccctgcag
cagtgcatcgggctgatccaggagcgcatgaatcaggcgccagccgaggtagatgtgcag
gtgctgcagttcttctaccaggcattgcagttcagccgggtggctgaattgttcgacgag
catttcatcttcgacatcagccagcgtgaaggccagcgcaagcggcgcctggctaccctg
tgcctgcgcaatgtcaccccggcgcggctgctggccccacgcatgcaggcggcgcgcagt
gtgacgctgttttccgccacgctgagccctcggcatttctacagcgacttgctcggcatg
ccggccgacacggcctggctggaagtggcagcgccgtttcgcgccgaacaactcgaagta
cgcatcgccagccaggtctcgacccgttaccgagaacgccaggcttctctggcgccaatc
gtcgcgctgatcgccgagcagtaccagcgcatgcccggtaactacctggcctttttcagc
agtttcgaatacctgcaacaggtggccggcttgctggcagagcggcatgccgacattccc
ctgtgggcgcaagcggcgggcatggatgaagaggcgcgtcaggcgtttctcgatcgcttc
gtggcggatggctgcggggtgggttttgcggtgctggggggcgcatttggggaaggggtc
gatttacccggcacgcgcttgatcggggcgtttgtcgcgaccctcgggctgccccaggtc
aaccctgtcaacgagcagttcaagcagcgcctggggcgccagtttggtgccggctttgat
tacgcctacctctacccaggcgtgcgcaaggtcattcaggcggcgggcagggtcattcgg
ggggaccaggaccaaggcgtgctggtgttgatcgacgaacgctttgccgaaccccgggtt
cagcaaatgtttcccagttggtggcggtcgggcggtgcgtaa
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integrated database retrieval system
