Pseudomonas kermanshahensis: PZ739_24020
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Entry
PZ739_24020 CDS
T08964
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PZ739_24020 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkm03400
]
PZ739_24020 (recB)
Enzymes [BR:
pkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PZ739_24020 (recB)
DNA repair and recombination proteins [BR:
pkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PZ739_24020 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WEL54865
LinkDB
All DBs
Position
complement(5346641..5350318)
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AA seq
1225 aa
AA seq
DB search
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQAFGRELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELDAADPLLHQLRDDYSQEAWPRCASRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVMRDYWRRFCYGMQGEA
LAWVRAHWGSPDVLLPRIRPLFGRVRAQQDEQAPESLIQTALGQRTGQLAALKAPWAQWA
EELRQICRDAVAAKQADGRKMQARYFEPWFDKLCAWAGDEQAVELDLGTGFTRLTPAGMA
EAWKSGEPPDHPGLHAMQTLQQQLQALPSPDAQLLEHAAGWVSARFEVEKRRRAEMGFDD
MLLRLQHALASEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRPETGLF
MIGDPKQAIYAFRGADIYTYLAARRATTGRLHSLDTNYRSSQAMVAAVNQVFLQAEARGE
GRGAFLFREAQDNPLPFIEVRAKGRSEHLLVDGQPSAALQCWHLQSEEPVSSSVYRQHLA
ASCASHIVALLNGGQQGTAGFRNGEGELRPCLPSDIAILVRDGHEAQMIRAELAARDVRS
VYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLNLSLAALDKLNQDERVW
EDWVMRFRRYRDTWQRQGVLPMLRHLLHDFQLPRTLIARSDGERVLTNLLHLAELLQQAA
GELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFIC
TSKPVDGTRLPLAWHDSQGNAHLTLTPDQEQIARADDERLAEDLRLLYVALTRAQHACWL
GVADLKRGNQKSSQLHRSALGYLLGGGLALTGSGQLADWLQALASSCPYIECPPLPLADV
QLYRTPHAERELLPARKPRRAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDDEVLDTQ
LLREVPAEGGDIHRFPRGPNPGTFLHGLLEWAGREGFAEVSGNPELIERTVGQRCNRRDW
TGWIPTLTPWLRQLLNEPLPVLAHDASLTLAHLRHYQIEMEFWFASHQVDAEQLDQLVAR
YTHPGQARPAAQPTLLNGMFKGFIDLAFELDGRYYVADYKSNWLGPDIQSYDSQAMEKAI
LEHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGANSSGHGVYFVRPPRAL
IEALDALFRGEHAPAQQDLFAGAAP
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaccgtcccctggcactgagtttccccttgcacggcagccagctgattgaa
gcgagtgccggtaccggcaagacgtttaccatctcggcgctgtacctgcggctcatcctc
gggcacgggggcgaacaggccttcggccgtgaactgctgcccccgcagattctggtggtg
acctttaccgacgccgccaccaaagagctgcgcgaacgtatccgcgctcgcttggccgag
gcggcgcggttcttccgtggcgagcttgacgctgccgacccactgctgcaccagttgcgc
gacgattactcgcaggaggcttggccacgttgtgccagccgcctggaaatcgccgtgcaa
tggatggacgaagccgcggtgtcgaccatccacggttggtgccagcgcatgctccgcgag
cacgcgttcgacagcggcagcctgttcacccagactctcgagaccgatcacagtgatttg
ctgggccaggtgatgcgcgattactggcgccggttctgctatggcatgcaaggtgaggcc
ctggcctgggtgcgtgcgcattggggcagccccgacgtgctgttgccgcgtattcgcccg
ctgttcggccgggtacgggcacagcaggacgagcaagcgcccgaatcgttgattcaaacc
gcgcttgggcaacgcaccgggcagttggctgcgctcaaggcgccctgggcacaatgggcc
gaggaactgcggcagatctgccgcgatgccgtggccgccaagcaggccgacgggcgtaag
atgcaggcacgctacttcgaaccttggttcgacaagctgtgcgcctgggccggcgacgag
caggccgtcgagctcgatcttggcaccggcttcacccgcctgacgccagcgggcatggcc
gaggcgtggaagtctggggagccacccgatcaccccgggctgcacgccatgcagacgctg
cagcaacaattgcaggccctgcccagcccagatgcgcagttgcttgaacacgctgctggc
tgggtatcggcgcgcttcgaagtggaaaagcgccggcgcgccgagatgggcttcgacgac
atgctgctgcggttgcaacatgccttggccagtgaggccggcgagcgcctggccgggttg
attcgtgagcagttcccggtagcgctgatcgacgaattccaggacaccgacccggtccag
tacgggattttcgagcggatctaccagatcagcgagaaccgccctgaaaccgggctgttc
atgattggcgaccccaagcaggcgatctatgccttccgcggtgccgacatctatacctac
ctcgctgcccggcgcgccaccaccgggcgcttgcacagcctggacaccaactaccgttcg
agccaggccatggtcgcggcggtcaaccaggtgtttctccaagccgaggccagaggcgag
gggcgaggggcgtttctgttccgtgaagcgcaagacaacccgttgcccttcatcgaggtc
cgcgccaaaggccgtagcgagcacctgctggtggacggccagccaagcgcagccctgcaa
tgctggcacctgcagagcgaagagccggtatcgagtagcgtttaccgccagcacctggct
gccagctgcgccagccatattgtcgccttgctcaacggtgggcagcagggtacggcgggt
ttccgcaacggcgaaggtgaactgcgcccctgcctgccttcggatatcgccattctcgtg
cgcgacggccacgaggcacagatgatccgtgccgaactggccgcgcgtgatgtgcgcagc
gtgtacctgtccgacaaggactcggtgttcgccgcccaagaggcgcatgacctgctggcc
tggctcaaggcctgtgccgagccggattcggagcgcctgctcaaggccgcgctggccagc
cttacgctcaacctgtcactggcggcgctggacaaactgaaccaggacgaacgggtgtgg
gaagactgggtcatgcgttttcggcgctatcgcgatacctggcagcgccaaggcgtgctg
ccgatgctgcgccacttgctgcacgacttccagctgccgcgcacgctcatcgcccgcagt
gacggcgagcgtgtgctaaccaacctgctgcacctggccgagctgctgcaacaggcggcg
ggcgagctcgatggcgagcaagcgttgatccgtcacctagccgaacacctggccagctcc
ggtcaggccggtgaagaacagatcctgcggctggagagcgacgagcaactggtcaaagtg
gtgaccatccacaagtccaagggcctcgaataccccttggtctacttgccgttcatctgc
accagcaagcccgtggacggtacccgcctgcccttggcctggcatgacagccaaggcaac
gcgcacctgacgttaacccctgatcaggagcagatcgcccgcgccgacgacgagcgcctg
gccgaagacctgcgtctgctctacgtggccctgacccgcgcccagcatgcctgctggctt
ggcgtcgccgacctcaagcgcggcaaccagaagagctcgcaactgcaccgctcagccctc
ggttacctgcttggcggtggccttgcgttgacggggtccgggcaattggcggactggctg
caggcgttggcatcaagctgcccgtatattgagtgcccaccgctgccgctggccgacgtt
cagctgtatcgcacgccgcacgccgagcgtgagctgctgcccgcgcgcaagccccggcga
gcggccgccgagcactggtggattgcctcctatagcgccttgcgcgtcggggaccagacc
ctcggtgccgacagctcacaggcccagcaacttctggatgacgaagtcctcgatacgcaa
ctgctgcgcgaggtgccggctgaagggggggatatccaccgcttcccacgcgggccaaat
cccggcaccttcctgcatggcctgctggaatgggccggccgagaaggcttcgccgaagtc
agcggcaaccccgagctgatcgagcgcacggtcggccagcgctgcaatcgccgtgactgg
actggctggatcccgacgctgacgccgtggctgcgccagttgctgaacgaaccgctgcct
gtcctggcccacgacgcaagcctcaccctggcgcacctgcgtcactaccagatcgaaatg
gaattctggttcgccagccatcaggtcgacgccgaacagctcgatcaactggtggcgcgt
tatacgcacccaggccaggcgcggccggcggcacagccgacgctgctcaacggcatgttc
aagggcttcatcgacctggccttcgaactggacgggcgctattacgtggccgattacaaa
tccaactggctgggcccggacatccagtcctacgacagccaggccatggaaaaggccatc
ctcgagcatcgttacgacttgcagtacgtgctctacctgctggccctgcaccgccaactg
cgcgcccgcctgcctgactacgattacgaccgccatgtcggcggcgccctgttcatcttc
ctgcgcggtgccaacagcagcggtcatggtgtgtacttcgtcaggccgccgcgggcactg
atcgaagccctcgatgcgctgttccgtggcgagcatgcacccgcacagcaggacctgttt
gccggagccgcaccatga
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