Pseudomonas kermanshahensis: PZ739_25110
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Entry
PZ739_25110 CDS
T08964
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZ739_25110 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkm03019
]
PZ739_25110 (rnr)
03016 Transfer RNA biogenesis [BR:
pkm03016
]
PZ739_25110 (rnr)
Enzymes [BR:
pkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PZ739_25110 (rnr)
Messenger RNA biogenesis [BR:
pkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PZ739_25110 (rnr)
Transfer RNA biogenesis [BR:
pkm03016
]
Prokaryotic type
tRNA degradation factors
PZ739_25110 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
WEL55069
LinkDB
All DBs
Position
complement(5587352..5589931)
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AA seq
859 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAAEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLIPDDKSDDLFLSPSQMR
LVFDGDRALARVSGTDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVIEVIGNYMAPGMEIDVALRSYDIPHV
WPDDVVKEARKFRSEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHARTREGKALREEYKEVLPD
LKSLYALYKVLLDARHTRGAIDFETQETRIIFGDQRKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
SERPDFHLIQTVMLRSLSQAVYSTDNNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII
RSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERTGRS
FRLGDTIEVKVMRVDLDERKIDFEVSEKTLSGPIGRKQRGAAASADGKPEQPQPVTEAKA
TPKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKPSGKPT
KHRKGPPKSGAPRKSKSKS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctatccccagccgtgagctgatcctccagcgtcttgccgatcgtggcgagccggccgcc
cgcgaggagctggcggcagaattcggtctgtacgaggaagaccagattgaagccctgcgc
cgccgcctgcgtgccatggagcgcgacggccagcttatctatacccggcgtggcacctat
gccccggtagacaagctggaccttatctgtggccgcatttccggccaccgcgacggtttt
ggcttcctcatccctgatgacaagagcgacgacctgttcctcagcccttcgcagatgcgc
ctggtattcgatggcgaccgcgccctggcgcgtgtgtccggcaccgaccgccgtggccgc
cgtgaaggtgtattggtagaagtcatctcccgcgcgcatgaaagcgtggtcgggcgttac
ttcgaagagggcggtatcggctacgtgacgccggacaacccgaagatccagcaagaagtg
ctggtgaccgccggtcgcaatggcggcgccaagatcggccagttcgtcgagatcaagatc
acgcactggcctaccccgcgcttccagccgcaaggcgatgtgattgaagtgatcggcaac
tacatggcgccgggcatggaaatcgacgttgccctgcgcagctacgacatcccacacgtc
tggcccgatgacgtggtcaaggaagcgcgcaagttccgctccgaagtggaagagaaggac
aaggaaaagcgcatcgacctgcgccacctgcctttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtgtattgcgagccgctgggcaagctgcgcctgttctccggt
ggctggcgcctgtacgtggcgattgccgacgtttccagctacgtgcgcctgggttctgcc
ctggacgtcgaagcccagcagcgtggaaactcggtgtacttcccggagcgcgtggtgccg
atgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgcctg
gccatggtctgcgaaatgaccatcaacaaagccggccagatggtcgactaccagttctac
gaaggcgtgatccactcccatgcccgcctgacctacaacaaggtcagcagcatgctcgag
catgcccgcacccgtgaagggaaggcgctgcgcgaggagtacaaggaagtcctgccggac
ctgaagagcctttatgcgctttacaaggtgctgctggacgcgcgccacacccgcggcgcg
atcgacttcgagacccaagaaacccgcatcatctttggcgatcaacgcaagatcgccgag
atccgcccgaccgtgcgcaacgatgcccacaagttgatcgaggaatgcatgctggcggcc
aacgtggccaccgccgagttcctgcaaaagcacggcgtgccggcgctgtaccgcgtgcac
gatggcccgccgccggagcgcctggaaaaactgcgcgccttcctcggtgaactgggcttg
tcgctgcacaagggcaaggacccgtcgccgaaggactaccaggccctgctggcgagcatt
tccgagcgcccagacttccacctgatccagaccgtgatgctgcgctcgctgagccaggcg
gtgtacagcaccgacaacaacggccacttcggcctgaattacgaggcttacacccacttc
acctcgccgatccgtcgttacccggacctgctggtgcaccgtgccatccgtagcatcatc
cgctccaaggtggataccccgcacgtcaagcgtgctggcgccatgagcattcccaaggcg
cgcatctacccgtacgacgagaacaccctcgagcaactcggcgagcagtgctcgatgacc
gaacggcgtgccgacgaggcgacgcgcgatgtggtcaactggctcaagtgcgagttcatg
aaggaccgtgtgggcgagaccttcccgggtgtgattaccgcggtgaccggtttcggcttg
ttcgtcgagctgacggacatctacgtagaaggcctggtgcacgtcagtgcgctgccgggc
gactactaccacttcgacccggttcatcatcgcctgtccggcgagcgtaccgggcgcagc
ttccgcttgggcgacacgatcgaagtcaaggtcatgcgcgttgacctggacgagcgcaag
atcgacttcgaagtctccgagaagaccctcagcgggccgatcggtcgcaagcagcgtggc
gccgcagcgtccgcagacggcaagcccgagcagccgcagccggtcaccgaggcgaaagcc
acgcccaagccgcgcagccgcaaaagcgaggcgtccgaggcctacttccctaaagatgcc
gtgcagcgcaacgctgaagtgcgcaagagccgcgagatgaagaaggcgttgatgaccgac
gctcgcagcagtgccggcagcaagtcggagaagggtggcaagccatccggcaagccgacc
aagcatcgcaaaggcccgccgaagtccggtgcgccccgcaagagcaagagcaagtcatga
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