Plasmodium knowlesi: PKNH_0405200
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Entry
PKNH_0405200 CDS
T01094
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2, putative
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03020
RNA polymerase
pkn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PKNH_0405200
09124 Replication and repair
03420 Nucleotide excision repair
PKNH_0405200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkn03021
]
PKNH_0405200
03400 DNA repair and recombination proteins [BR:
pkn03400
]
PKNH_0405200
Enzymes [BR:
pkn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PKNH_0405200
Transcription machinery [BR:
pkn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PKNH_0405200
DNA repair and recombination proteins [BR:
pkn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PKNH_0405200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7319164
NCBI-ProteinID:
XP_002257877
UniProt:
A0A679KUY9
LinkDB
All DBs
Position
4:complement(201690..205871)
Genome browser
AA seq
1330 aa
AA seq
DB search
MAVKLEPSYFSSEYMHPDAPLEEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDF
IEYRMQEIIDEHPALEIRPQAQYRSEGDEQKNVMYALKFGQLSLDRPFYDERNLTNKNLW
PQEARLRNLTYSSAIYIDIEQSTYVVDESSGSQILKDKFIYERINLGRIPLMLKSMFCWT
KGLPESEIADMGECAFDQGGYFIVNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIR
SQMERSQATSAFSVKMKTKTGSRGSSVRTGGQLVATLPYIRTEISVGILFRALGCTSDRD
ILQRIVYDFNDKMMINTLRETLEECIDYPTQDICLDFIGKRGPTVGASREKRILYAKELL
RKEVLPHMGTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASS
FSTYFRKMAKDVKRVLQRQIDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVI
RTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGL
VKNLSLMCDISVGTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDN
LIETLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVKGENKLKLTKEH
VKNMMAYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYHNNYTHCEIHPS
LILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQRPLVCT
KVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQ
GSLIIESFEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNIEDEDDIV
IQRMPNIQMGYNSGASTSNGFMIGKESSAGGSVLNGSASSVCGSVSSSPYSPSTMGGSNM
MDSMPDSPVSDRYSSSGPVGSATVGPASVSSSTPSNTTIFRSGNTISSVNSPQYGTTIVS
GSTKDDLEIPTLTISTSNILKQYKKDCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS
VRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECL
AGKVAAIEGGEGDATPFSKITVQEISQRLHNLGYEKYGNDVLYNGHNGKMLKSKIFIGPT
YYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKER
LFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIPYACKLLFQELMTMA
IYPKLVLEDM
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaaattggaaccgtcttacttctccagcgagtatatgcatccagacgccccg
ctggaggaggaccatgacgaagaggaaagaataacagaggaagacagttgggtggtgatt
ggatcgttctttggtagccatggattagtaaatcagcagatcgaaagttacaatgacttt
attgagtacaggatgcaggagataatagatgagcacccagcattagaaatcaggccgcag
gcacaataccgctcagagggagatgaacagaaaaacgtaatgtacgcattaaagtttggg
caactgtccttagataggccattctacgatgagaggaatttaacgaataagaacttgtgg
ccacaggaggcaaggctaaggaatctgacatactcgtctgctatatacatagatattgaa
caaagtacgtacgtagtggatgaaagttcaggtagccaaattttgaaggataaatttata
tacgaaagaataaacttgggaagaataccacttatgttaaaatctatgttctgttggacg
aagggtttaccagagagcgagattgctgatatgggtgagtgtgcatttgatcaaggagga
tacttcattgtgaatggaggggagaaggtacttgtagcacaggaacgaatggctcacaat
tttatttatgtatttaaaaagaagcaaccttctaagtttgggtgggtagctgagataagg
tctcagatggagaggtctcaagctacatctgcattttctgtgaagatgaaaacgaaaacg
ggttctaggggttcatcagtgagaacaggagggcaattggtggctactttaccctatata
agaacggaaatttccgttggaattttgttcagagcgttgggttgtacatccgatagggat
atcctccaaagaattgtttacgattttaacgataaaatgatgattaacacattgagagag
acattagaagaatgtatagattatcctacacaggatatttgtcttgatttcattggtaaa
agaggacccactgttggagcatcaagggagaaaagaattttatacgccaaggagctttta
cgcaaggaggttctacctcacatgggtactggcccaggggttgagagcaagaaatcatat
ttcattgggtacatgattaataggctattgttagctgaactgggaagaattaaggaagac
gatcgagatcattttgggaagaaacgtttagatattgcagggcctctaatggccagcagt
ttctctacttattttagaaaaatggctaaagatgtaaaacgggttctacaaaggcagatc
gataataacaagccatttgatgtagcgggagctgttagaagttgttcacaaattacacag
ggaatgcagtatcagctagctacaggaaattggggtaaggataaagatggaaaggttata
agaacaggagtcgcacaggttcttaatcgattaacatattcctcgtgtttgtcacatctg
agacggttgaatacaccactgggtagagaagggaaaatggcgaaacccagacaattacat
aatacccattggggaatgatatgcccttttgaaaccccagaaggacaatcagtaggtctc
gtcaagaatctctccctaatgtgtgatataagtgtaggtacttccacaaataatattttc
gaatttctcctggaatggggtttagaatccctagatgaagttccaccccaattaatgaag
gaaaaggtgaagctcttcctgaatgggaaatgggttgggtgtttcaatcaaatagataac
ctgatcgaaacattgtatgagttaaggaggaggtgtgatatatctccagaggcatccatc
gtaagggatgtaaacagtaaggagataaaaatttttacagattcgggtagagcaatgaga
cctctatacgtggtgaagaatgtcaagggggaaaataaactaaagttaactaaggagcat
gtaaaaaatatgatggcctacccggagacttacaattgggattacctgatccaggaaggg
attatagaatacatcgattgtgaagaggaggaaactacaatgattagcatgtttatagat
gacttgaaaacagggacagggtaccataataattatacccattgtgagattcacccgtca
ttgatcctaggtgtatgtgcatctatcatcccatttagcgatcacaaccagagtccacgt
aatacatatcagagtgccatgggtaaacaagccatgggaatttacgttacgaactttaac
atacggttggataccctggctcatttgctgtactatccgcagagacctcttgtatgcacc
aaggtgatggaatatttacgatttagagagctgccggcgggaattaacgctatcgttgcc
atcatgtgctatacaggctacaaccaagaggatagtctgataatgaatcagtcatccata
gatagaggtttatttagaagtgtattttaccgaacttatactagtgaagagaaacaacaa
gggagtctgatcatagaatcatttgaaaaaccatccattagatatgtgaaaaatttaaaa
aggggagattacaccaagttagataatgatgggttaatcgctccaggtatacgggttcta
ggggatgatatcattatcggaaaagtatctccaaatattgaagacgaagacgatatagtg
attcaaaggatgccgaatatacagatgggttataattctggtgcatctacatctaatgga
tttatgatagggaaagagtcgtcagcgggaggaagcgtactcaatggaagtgcaagtagc
gtttgtggaagtgtttcttcaagtccctattctccgtcaacaatgggaggttccaatatg
atggattctatgccagactctccagtgagtgatagatacagtagcagtggacctgtgggg
tctgcaacggtgggcccagcaagtgtttcttcctctaccccaagcaataccacaattttt
aggagtggaaacacgatatccagtgtgaatagcccccaatatggaaccactatcgtttct
ggatctacgaaggacgacttagaaattcccacacttaccattagtacctctaacatcttg
aagcagtacaagaaggactgttccttaagtttacgagaaaatgaaaacggggttatagac
accgttatgctctcttccaatagccgaggcaataagttcgctaaggtaaaagtgcggtcc
gtacgtatcccgcaaattggagataagtttgcaagtagacatggacagaagggtacgatc
ggaataacataccgaacggaagatatgcccttcagttcagatggtacctttccagatatc
atcatgaacccccatgcagttccatcccgtatgactatcggtcacctcgtcgaatgtcta
gccgggaaggtggcggctattgagggtggagaaggagatgcaactccattttctaaaata
actgtacaggaaatttcgcaaaggttacacaaccttggatacgaaaagtatggtaatgat
gtgttgtacaatgggcataatggaaaaatgttaaaatcgaaaatcttcattgggccaaca
tactaccaaagattgaaacacatggtggaggataaaattcatgccaggagtagaggtcct
ctgacgatgataactagacaaccgactgaaggacgatccagggatggtggattacgtttc
ggagaaatggaaagagactgcatgatttcccatgggtctgcgaagatgctgaaggagagg
ctcttcgaagaaagtgatgcataccgtgtgcacgtgtgtgacaactgtgggctctgttgt
atcgccgacattaacaagaacgcctacgaatgtacagtgtgtaatagtaaaacgaatatt
tcgcagatctacatcccctacgcgtgcaagttgctctttcaggagctcatgaccatggct
atatatccgaagcttgtcttggaggatatgtaa
DBGET
integrated database retrieval system
