Plasmodium knowlesi: PKNH_0411300
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Entry
PKNH_0411300 CDS
T01094
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03013
Nucleocytoplasmic transport
pkn03015
mRNA surveillance pathway
pkn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PKNH_0411300
09122 Translation
03013 Nucleocytoplasmic transport
PKNH_0411300
03015 mRNA surveillance pathway
PKNH_0411300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_0411300
03041 Spliceosome [BR:
pkn03041
]
PKNH_0411300
Enzymes [BR:
pkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKNH_0411300
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PKNH_0411300
Spliceosome [BR:
pkn03041
]
Complex C
Other components
EJC/TREX
PKNH_0411300
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PKNH_0411300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
7319243
NCBI-ProteinID:
XP_002257937
UniProt:
A0A5K1VCQ5
A0A384KI41
LinkDB
All DBs
Position
4:<493068..>494784
Genome browser
AA seq
472 aa
AA seq
DB search
MATMDHSVQDELVDYEDDENILDAKDVKGNLDNSLLNNNNKGVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETNDEKDIKDEKEMNSSTSNNIGGGLTNGDGASKNKFVRCLGLAHTRELAYQIKNEFDR
FSKYLKGVRCEVVYGGISMSKHIKMFKEESIPHIIIGTPGRILALIREKYLLTDKIQHFV
LDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDE
AKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPS
IAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHR
VGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggaccacagcgtgcaggacgaacttgtggattacgaagatgacgaaaac
atattagatgccaaggatgtcaagggcaatttggacaacagtcttttaaacaacaacaac
aagggggtgaatgaaaatggcgccatgcgaggcagctatgccacggtgcacacgggaggt
tttaaggatttttttttgaagccggagttgcttagggccataagcgagagcggcttcgag
cacccttcggaggtgcagcaggaaaccatccccgcggccatcacgggtaccgacatcctc
tgccaggcgaaaagtggaatgggtaaaacagccgtgtttgtactgtccatcctgcagcag
ctggaaacgaacgacgaaaaggatataaaggatgagaaggaaatgaacagcagcaccagc
aacaacatcggaggaggcctaacgaacggagatggcgcgtccaaaaataaattcgtcaga
tgcctcggattggcacacacaagagaattagcttatcaaatcaaaaacgaattcgatcga
tttagtaaatacctaaaaggagtccgatgtgaagtggtctatggaggaatttcaatgagc
aagcatataaaaatgtttaaggaagaaagcattccccatattattataggaaccccagga
cgtatcctggcacttataagagaaaaatatttattaacagacaaaatacaacattttgtt
ctggatgagtgtgataagtgtctggaaaagctggacatgaggagtgatgtgcagaaaatt
tttatttctactcctttaaagaaacaggttatgtttttctctgctactatggcaaaagaa
atgagagatgtatgtaaaaaatttttacaaaaccccgtggaaatttttattgatgatgaa
gccaagttgaagctgcacggattgctacaacactatgtgaagttacaagaaaaggacaag
acgagaaaactaattgaaattttagacgccttagaatttaaccaagttattatttttgta
aaatctgtcacaagggctatcaccttggataaattgctgaccgaatgcaacttcccttcc
attgccatccatggtggccttgatcaacaggagagaattgaacgatacgataagtttaaa
aagtttgaaaatcgaatcttagtctccactgatttgtttggaagaggtattgacattgag
aggataaacattgtcattaattatgacatgcctgaaaattcagactcttatcttcacaga
gttggtcgagctggtcgatttggtaccaagggactcgccgttacgttcgtttcttctcaa
gaggatactttagcattgaatgaggtccagacccgttttgaagttgccatttcggaaatg
ccaaacaagatcgactgtaatgagtatatcaaccagtaa
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