Plasmodium knowlesi: PKNH_0718900
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Entry
PKNH_0718900 CDS
T01094
Name
(RefSeq) U4/U6 snRNA-associated-splicing factor, putative
KO
K13126
polyadenylate-binding protein
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03015
mRNA surveillance pathway
pkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PKNH_0718900
09123 Folding, sorting and degradation
03018 RNA degradation
PKNH_0718900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_0718900
03041 Spliceosome [BR:
pkn03041
]
PKNH_0718900
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PKNH_0718900
mRNA cycle factors
Stress granule specific factors
PKNH_0718900
Spliceosome [BR:
pkn03041
]
Complex C
Other components
Complex C specific factors
PKNH_0718900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
xRRM
RRM_Nup35
Lsm_interact
BRAP2
PreP_C
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
7319934
NCBI-ProteinID:
XP_002258480
UniProt:
A0A5K1U196
A0A384LNV5
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All DBs
Position
7:<829066..>830599
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AA seq
469 aa
AA seq
DB search
MSDKELHIKRRKVAKEDGKSNDEPGVATSLDISEGEYLVSGDEGEESNISIAHSDDGVTH
RDDSAEKGEGHVKHYLIEHMQDKSKLLKELGTLEENKLYVKNITDEVNKKDLINFFCKAT
GFVDTRVVRDSSGKSKSFAYVEFDTKENAANFFNTLEDSNVDKYKKFKIKEVDLYVAICK
STKVIYEEGKVFIKFSECQVDMDEVILKKGISDFLVMHSVVVEEIRLLGGSPPTHGYLQL
RNNEDVVKCVETIKEGIVENVHFTLKYSIPIIKKKIIPDIEKIKANKEKSKKFQEEKKKE
ENNCTIVVKNLHFNTRKNKLIKLFEQIGEIDKINLSKKVSENNIKRNRGYAFITFKNSND
ATSALILNDSIIDGRSILVSKFLGDDSRDKHRDGSSNLGGQFHRQHNTNRRGNYHHINYV
KNNLHQERRRINLNNPDDPNVTVEKRTEQTEGEEPTPLTNDDFRKFFFK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaaggagttacatatcaagaggagaaaagtagctaaggaggatgggaagtcc
aatgatgaaccaggtgttgcaacttcgttagacatttcggagggagaataccttgtatcg
ggagacgaaggggaggagagcaacattagcatcgcgcatagtgatgatggtgttacacac
agggatgatagcgccgagaagggggaaggacatgtgaagcactacctaattgagcatatg
caggataagagtaaactcctaaaggagctaggtacgttggaagaaaacaagttgtatgta
aaaaatataaccgatgaggttaacaagaaggatctaattaacttcttttgcaaggcaact
gggtttgtagacacgagggtggtgcgcgactcctcaggcaagtccaaaagttttgcctac
gtagaatttgataccaaagaaaacgcagccaatttttttaacaccctagaggatagtaac
gtcgacaagtataaaaaattcaaaataaaagaggtagatctctatgtagccatttgcaag
tctactaaagttatatacgaagaaggaaaggtttttattaagttctctgaatgccaggtg
gacatggatgaggtgatccttaagaagggaatttcggatttccttgtgatgcattctgtg
gtcgtggaagagatccgccttctcggaggaagcccccccacgcacggctacctgcaactg
cgcaacaacgaagatgtagtgaaatgcgtggaaaccatcaaagaagggatcgtcgaaaac
gtgcacttcaccctaaaatatagcatcccaataatcaagaaaaaaattatcccagacata
gaaaaaattaaagccaacaaggaaaaaagtaaaaagttccaggaggaaaagaaaaaagag
gaaaataactgcaccatcgttgtaaagaatttgcatttcaacacgaggaaaaacaaactg
ataaaattattcgaacagattggagaaattgataaaattaatcttagcaagaaagtatct
gaaaataatattaaacggaatagggggtatgcctttattacatttaaaaatagtaatgat
gcgacatctgcgttgatcctcaatgattctattatcgacgggcgaagtattttggtgtct
aaatttctcggtgatgatagtagggacaagcatagagatggtagtagtaacctgggtgga
caattccataggcagcataacaccaataggagaggaaattaccaccacataaattatgtg
aaaaataatcttcatcaggaaagaagaagaatcaacttgaacaatccagatgatccaaac
gtaacagtggaaaaaagaaccgaacaaacggagggagaagaacccactccactaactaac
gatgattttcggaaatttttttttaagtaa
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