Plasmodium knowlesi: PKNH_0804200
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Entry
PKNH_0804200 CDS
T01094
Name
(RefSeq) regulator of nonsense transcripts 1, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03013
Nucleocytoplasmic transport
pkn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PKNH_0804200
03015 mRNA surveillance pathway
PKNH_0804200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_0804200
Enzymes [BR:
pkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PKNH_0804200
5.6.2.5 RNA 5'-3' helicase
PKNH_0804200
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PKNH_0804200
mRNA cycle factors
Common to processing body (P body) and stress granule
PKNH_0804200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
NPHP3_N
PhoH
SRP54
NAT10_TcmA_helicase
AAA_22
DEAD
nSTAND3
AAA_16
Ltn1_1st
AAA
CATSPERE_NTD1
Prok-RING_2
Motif
Other DBs
NCBI-GeneID:
7320527
NCBI-ProteinID:
XP_002258683
UniProt:
A0A5K1V7C9
A0A384LMI2
LinkDB
All DBs
Position
8:complement(<213891..>218441)
Genome browser
AA seq
1516 aa
AA seq
DB search
MDSSFDYNQIDVDDFDDFYNFCTLKEKEKKKNGKRIGEEFFERDVKNEENGEDEGECEES
TDNFSVDTTTMYKEGSKKSRSIGKNSKEILQTGKTSHEKRMDEVHTEEEDRLIGRRILDL
EHRYAYVDDDYHDIGAEIELEDESLADERISSYDKDDQWNNIEYKTKKKKNQQMDGKNMG
FNNAHSSNGDNVHFPQERSNCGDHTSNRYASVSKEDYEEDKEKIYEDYNGRRKYPRDCSQ
YSNSNCDSYSYSVDMTSVSKGNKEEPKYFRCRYCEMDSVDSVVQCNTCGRWFCNGSYGTC
GSHIVTHLVRSKHKEIKLHKKSLLGETILECYNCGCKNVFLLGFLPTPEEGVVVIICRDP
CLARCISLSEKCQKSGELEQEQVKKNADNSTGEKQKDGKENPAKLNNPTGRDIKGEKKKA
LPYDDFNAEEELIGTDEDDVVSTKEDTDMVKNKGYISSDDFGYMSDQEKGSEGGKNSHGV
FTAKKSNQKGKEKKMEHDVNPKEEDSEAGSSYCASVGNNLKELIKMKDWDLNKWQPVIED
RCLLEWLVNIPTAEEAERKGKRTTSYNVNKLEELWKNKKDVYIDELDGEILNDEPVKVEL
RYKDAYHYQSIFAPLIQLEADYDKSIKEGQKQANVTVRWDIGLNKKRYAHFIYVKEESEL
RLVAGDELKLSYTYPDGTIWSCEGHISRIHNTEEIALELRTSNTANGPWVDNITTGYTVE
FVWKSTAYDRMQLALNEFAQNSYSLSGYLYHKLLGHEVSEDSLNYYKAALTNQIHGKRTP
RIANYSAPNLAALNHSQIDAIKKSLVSPLSLIQGPPGTGKTLTCATLVYHLSKTKMGKVL
VTAPSNVAVDQLSVRIHKTGLKVVRLCAKSREYVPSIADYLYLHNQMKLIKSDIGEELNK
LLELKEEVGELSQKDERRLKKLIFFAEYKILVEADVICTTCVGAMDKRLKRFRFSQVLVD
EATQSTEPECLVPLVTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVMLGITPF
RLEVQYRMHPALSEFPSYVFYDGCLQNGITLKEREYPLKDFPWPNPKCPMFFYNSTGLEE
MSASGTSYLNRAEASNMEKLVRTLINCGLKPSQIGVITPYEGQRAYITSLFQKNISYQHS
TEIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRAKYGLIICGNAKV
LSRHHVMIKKLHNSNETITNVNSVWINLLSQFKKKDLIVEGCLSNLKPMNIHIPTPTKQP
SRYINFSYFLSSERPFRGGVFSERSRSRSRSRSVGSDKSGKTGRSEGSHAGSDDCKTQSS
SSFIHMNMSNLSYCSDEVVLNKDILSYMHQRQGGGIKQMGKSYINNLSQGSQFNDYSSVN
KNYQSDNFSNYEAESSISVSTNKYANQNLMCYNRGSLSEERKNHVASHFSNSHFRENYDG
GFMRKSDMFAYPFYYGSKRDPSSLHNGQGGYRSHTGKNAYTSHNPRKPRSNGGHHGYVKQ
NLGNTTERRAYRNRNV
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atggacagctcattcgactacaaccaaatagatgtggacgattttgatgacttctacaat
ttctgtaccttaaaggagaaggagaaaaaaaaaaatgggaaaaggatcggggaagagttt
ttcgagagggatgtgaaaaatgaagaaaacggggaagatgaaggagagtgcgaagaaagc
acggataatttctccgtagacaccacaaccatgtataaagaaggaagtaagaaaagtaga
tcaattggaaaaaatagcaaagaaatattacagacaggcaagacttcgcatgagaagagg
atggatgaagtgcacacagaggaagaagatcgcttgattgggaggagaattcttgatttg
gaacacagatatgcatatgtagatgatgattatcacgatatcggtgctgagatcgaactt
gaggatgaaagtttggcggacgagcgcatttctagttacgacaaggatgaccagtggaat
aacatagaatacaaaacaaaaaaaaaaaaaaatcaacagatggatggaaagaacatgggt
ttcaataatgcacacagtagcaatggcgacaatgtgcactttccccaggagagaagcaac
tgtggggaccacacgtccaacaggtatgctagtgtatcgaaagaagactacgaagaggat
aaagaaaaaatctacgaagattacaatggtaggaggaagtacccaagggattgcagtcag
tactcgaatagtaactgcgacagttacagttatagtgttgacatgacaagcgtgagtaaa
ggaaataaagaagaacccaaatattttagatgtcgttactgtgaaatggattctgtggat
agtgtggttcagtgcaacacctgtggtcgatggttctgtaatggatcctatggtacatgt
ggtagccacatcgtcacacatctggtgaggtcaaagcataaggaaattaagctacacaag
aagagcctactgggggaaaccatcttggagtgctataactgtgggtgcaaaaatgtgttt
ttactaggtttcctacctactcctgaggagggagtcgttgtcattatatgtagagaccct
tgcttagccaggtgcatttcactgagcgagaaatgtcagaagagtggtgaattggaacaa
gagcaggtgaaaaaaaacgcggataattcaacaggggagaagcaaaaagatggaaaggaa
aaccccgctaaactgaacaacccaacggggagagacattaaaggggaaaagaaaaaagct
ctcccttatgatgatttcaacgcggaagaggagctaattggcacagatgaagatgatgtt
gttagcacgaaggaagacacggatatggtgaagaacaagggctacataagcagcgatgat
tttggttacatgagtgatcaggaaaaggggagcgaagggggaaaaaactcccatggggta
tttacggcgaagaagagtaatcaaaaaggaaaggagaaaaaaatggaacatgatgtaaat
ccgaaggaggaagactctgaggctggaagtagttattgcgcaagtgtaggaaacaattta
aaggagcttataaagatgaaggactgggatttgaataaatggcaaccagtgatagaagac
aggtgtctactagagtggctagtaaatatccccaccgcggaagaagcagaaagaaaggga
aaaagaaccacatcatataatgtgaataagttagaagagctatggaaaaataagaaagat
gtatatatagatgagttagatggagagatattgaatgatgaacctgttaaggtagaacta
aggtataaagacgcataccattatcagtccatcttcgcaccattaattcaattggaggcg
gattatgacaaatcgataaaggagggtcagaagcaagcaaatgttacagtgcgttgggat
ataggattgaataaaaaaagatatgcccatttcatttacgtgaaggaagaaagtgaacta
aggttagtagcaggagatgaattaaaattatcatatacttatcctgacggaacgatatgg
agttgcgaaggacacatttctagaattcacaacacggaggaaatagccttagaattaaga
acctccaatacggctaatggaccatgggtagataacataacgactgggtacacagtggag
ttcgtttggaaaagtacagcatatgatagaatgcagttagcgttaaatgaattcgcacaa
aattcctactcactcagtgggtacttatatcataaactgcttggccacgaagtatcagaa
gattcattaaattattacaaggcagcattgaccaatcagatccatgggaagagaactcca
cgtattgcaaattactccgcccccaacttagctgcacttaatcattcacaaattgatgct
ataaagaaaagcttagtatcaccgttatccctaattcaaggaccaccaggtacagggaaa
acattaacctgtgctactttggtgtatcatttgtccaagacgaaaatgggaaaagtgtta
gtgactgctcctagtaacgttgctgtggatcagctgtcagtaagaatacacaagactgga
ctaaaggtagtacgactgtgtgccaaaagtagagaatacgtaccgagcattgcagattat
ttgtacttgcataatcagatgaaattgataaaatcagatattggagaggaattgaataaa
ttacttgaactgaaggaggaagtaggagaattatcacagaaggatgaaaggagattaaaa
aagttaatttttttcgcagaatataaaatattggtagaggcagatgtaatatgtactacc
tgtgttggtgccatggacaaacgattgaaacgttttcgatttagtcaagtgttagttgat
gaagcaactcaatcaacagaaccggaatgtctagtaccacttgttaccggagctaaacaa
attgtactagttggagatcactgtcagttaggtcccataatagtttgtaagaaggcagca
aatgcagggttgggaaagagtctattcgaaagattagttatgttgggtattacccctttc
aggttagaggttcagtaccgtatgcatcctgctttaagtgagtttccatcgtacgttttc
tatgatggttgtctccaaaacggaatcacattgaaggaacgagaatatcctctgaaggac
ttcccatggccgaatccaaaatgccctatgttcttttacaattccactgggttggaagaa
atgtcggcctccgggacgagctacttaaacagagcagaagcgtccaacatggagaagctt
gtcagaactctcatcaattgtgggctgaagccaagccaaattggggtgataacaccgtat
gagggacagagagcttacataacttccctttttcagaagaacatttcttaccaacattcc
acagagatagaagtggcatctgtggatgcattccaaggaagggaaaaggatttcatcctt
ctctcttgtgttcgatcgaacaagaaattaggaattggttttttaaatgacccaaggagg
ttaaacgtagcattgacgagggccaagtatgggttgatcatatgtggtaatgccaaggtg
ctgtccaggcatcacgtaatgataaaaaaattacataactcgaatgagaccatcacgaat
gtgaactccgtctggattaatctcctcagtcagtttaagaagaaggatctaattgtcgag
ggttgtttatcgaatttgaagcctatgaacattcatatcccgaccccgacaaagcagccc
tcgaggtacatcaacttcagttatttcctatctagcgaaagacccttccgtgggggcgtg
ttctcagaaagaagcaggagcaggagcaggagcagaagcgttggaagtgataaaagtggt
aaaacaggtagaagtgaaggaagccacgctggtagtgatgactgtaagacccaaagtagc
agttctttcatacacatgaatatgtcaaaccttagctactgcagtgatgaggtggtgctg
aacaaggacatcctcagttacatgcatcaaaggcaaggtggtggaatcaaacagatggga
aaatcctacataaataatttaagtcagggttcccagttcaatgactattcttctgtaaat
aaaaattatcaaagtgataacttctcgaattatgaggctgagtcttccatttcagttagc
acgaacaaatatgctaaccaaaatttgatgtgctacaatagaggcagtttgagtgaggaa
cgaaagaatcatgtagctagccatttttcgaattcccattttagagaaaactacgatggc
ggcttcatgaggaagtctgatatgtttgcttacccgttctactacggaagtaagagagat
ccctccagtttacacaacggacagggtggatacagatcgcacactgggaaaaacgcgtat
acatcgcataatccgcgtaagccgcgcagtaatggcggccaccatggttacgtgaaacag
aacctcggcaatacaacagaacgaagagcatatcgaaatagaaatgtatga
DBGET
integrated database retrieval system
