Plasmodium knowlesi: PKNH_0904600
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Entry
PKNH_0904600 CDS
T01094
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03018
RNA degradation
pkn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PKNH_0904600
09123 Folding, sorting and degradation
03018 RNA degradation
PKNH_0904600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_0904600
03041 Spliceosome [BR:
pkn03041
]
PKNH_0904600
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PKNH_0904600
mRNA degradation factors
5'-3' decay
Lsm complex
PKNH_0904600
Spliceosome [BR:
pkn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PKNH_0904600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7957
SM-ATX
Motif
Other DBs
NCBI-GeneID:
7320787
NCBI-ProteinID:
XP_002259070
UniProt:
A0A5K1U711
A0A384LH30
LinkDB
All DBs
Position
9:<217408..>218254
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AA seq
126 aa
AA seq
DB search
MVFPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISEC
YVRGNSVKYIRVQDEAIDQAIEETNEQKARNIGRGRGGRGRGRGTGRGTDNRGGRGGQMR
AGRRGF
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atggttttccccttaacgttgttgaaatgctcgcaaaaccagccggtgatggtggagctg
aaaaatggagaaacgtacagcggcttcctcgtcttttgtgatcgctttatgaatttacac
atgaaaaatataatatgtacgtcaaaggatggggacaaattttggaaaatctcagaatgt
tacgtcagggggaatagcgttaaatatattcgagttcaggatgaggccatcgatcaagcc
atagaggaaacgaatgaacaaaaagcgagaaatataggcagaggccgcggaggaagaggt
agaggacgcgggactggcagaggcacagacaacagaggtggaaggggaggccaaatgcgc
gcaggaagaaggggattctaa
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