Plasmodium knowlesi: PKNH_1148600
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Entry
PKNH_1148600 CDS
T01094
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKNH_1148600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_1148600
03041 Spliceosome [BR:
pkn03041
]
PKNH_1148600
03009 Ribosome biogenesis [BR:
pkn03009
]
PKNH_1148600
03016 Transfer RNA biogenesis [BR:
pkn03016
]
PKNH_1148600
Enzymes [BR:
pkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PKNH_1148600
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PKNH_1148600
Spliceosome [BR:
pkn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PKNH_1148600
Complex C
U4/U6.U5 tri-SnRNP related factors
PKNH_1148600
Ribosome biogenesis [BR:
pkn03009
]
Eukaryotic type
Pre-60S particles
Helicases
PKNH_1148600
Transfer RNA biogenesis [BR:
pkn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PKNH_1148600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
7321701
NCBI-ProteinID:
XP_002261660
UniProt:
A0A5K1VRP3
A0A384KLA8
LinkDB
All DBs
Position
11:complement(2267396..2271559)
Genome browser
AA seq
1332 aa
AA seq
DB search
MSGGNIDDLFNVFEENGIEDNISTKDEAGGVQVDNHPEGEVNEENVSKMHTDKGAIGDEI
HCNEENERGTHPGEGHTGRDEEGDNNGDAQLNKQPKGVASAPIGTPQINVENLISCKKRD
QKVQNKIKEEIYNDIQMVDGTTRNASNKVRKLNENQNEKNAEKGEKQTDESGPVEETLIE
NSKTINNDDVLVLEEFRSDVNCIHKCIRPKSYVHNKLSETLTPARTYKFELDTFQKKSIE
CLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLSEEFKDV
GLITGDISINPDASIIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEET
IILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIYPTSSESVF
LICDENKDFKKNNFIKAVNAIKEKNNMSEDTHQQNGNSRHNRRTKKNVHDIEKIVQMCHS
RNYTPLIIFAFSKKECEVNATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQF
ILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLRK
FDGVEKRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDSPLHWREAEKLFVGEANRLVSQF
HLGYNMILNLLRIEGITPEFMIERSFIQYQMKKSLFQKILAKKKVEEKIKEIFNQLTSVY
LDKDDQEISKGNLLKKIMDPNYECTSPAGEEMSALQSVYTQHGDQNSNMEEDLSSGEKAE
ITINEEDIQEKEGTHSEHTLDTMNDELKNYNTVFSCISNYYILRNKLIDLGETYRSILTA
RKNITPYLAMGRLLYLVEDDLRWGWAICIEGKIVEQANRGRSAGRNNALRSANATNTTNP
ANAEDADVLLVDCLVPYSQNRKRKRFQGDDGDVSGEDDVDELPEGTQKEFVPATDRMKAK
WKLITFHIKCIYQISAVVLNLEKPFDKKNEEQIMSAKMKYNTMVKCLKGEKNIPVINPHQ
MEIKDEAFLKVVKNINYHEQMLSRNKLLNSRNLHKYYQLYNMYVALQFEKNLLEANIEKC
RFIVLKKELKNMLVLLQGLNYIEISHNLEGENAQQGINAQEINMEKVERQEIKGDQSTYQ
NELESGGNFTREEEKSYVVTMKGQIASAILSVDELVISELFFSNFFSKYNYDYICAFLSC
FVYDESTNKEVAIEDPILVEGYEQIIRTATHVSNKMNECGMSMNLKDYLDKFKSAIMPIV
LQWVRGYSFMEILTDSQIYEGSIIRTLRRLDELLRQMICAFRGINNDSMCEILTEATKKL
RRGIPFSPSLYL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcggtaacatcgatgacctatttaatgtctttgaagaaaatggcatagaagat
aatatttccacgaaggatgaagcgggaggagtccaggtggacaaccaccccgagggtgaa
gtgaacgaagagaatgtcagtaaaatgcatactgacaaaggtgcaataggagatgagata
cactgcaatgaggaaaacgaaagaggtacccatcccggagagggccatacggggagagac
gaagaaggcgacaataacggggatgcgcaattaaataagcaaccgaagggtgtggcttcc
gcccctatagggaccccccaaattaatgttgaaaacctcatttcgtgcaaaaagagggac
caaaaggtgcagaacaaaataaaagaggaaatatataacgacatacaaatggtcgatggc
acgaccagaaatgcaagcaacaaagtaagaaagttgaatgaaaatcaaaacgaaaagaac
gctgaaaaaggagaaaaacaaacggatgaaagcggaccggtagaagaaacactaatcgaa
aatagcaaaacgataaacaatgacgatgtactcgttttggaggagttccgcagtgatgtc
aattgtattcacaagtgtatccggccaaagagttacgttcacaacaagctcagtgaaact
ctcaccccggccaggacgtacaaatttgaattagacacttttcagaagaaatctattgaa
tgtttggagcgaaacgaaagtgtcttagtgtcagcgcacacatctgctggaaagacggtt
atcgcagagtacgccatcgctctagggttaagggataagcaaagagttatctacacgagc
cctataaaagcgttaagtaatcaaaagtacagagacctcagtgaagaatttaaagatgtc
ggattgatcacaggagatatttccataaatcctgatgcttccatcattgtcatgacgaca
gaaattttgagatccatgttgtacagaggctcttccctaacgaaagaagttaagtgggta
atttttgatgaaattcattacatgcgagacagagatagaggagtaatctgggaagaaacg
atcatattactaccactcatggtgcgctttattttcctaagtgcaaccatcccaaatggt
attcaattcgcagaatgggtgagcagtatcaaaagccaagcttgccacattgtgtacacc
gattatcgacccacgcccctgcaacattatatctacccaacatctagcgaaagcgttttt
cttatttgtgatgaaaataaagattttaaaaaaaataatttcatcaaagcagtcaatgct
ataaaagaaaaaaacaacatgtcagaagatacccaccagcagaatgggaatagtaggcat
aacagacgaacaaaaaaaaatgtccatgacattgaaaaaattgtacagatgtgtcactct
cgtaattacacaccacttatcatttttgcattttcaaaaaaggaatgcgaagtaaatgct
actaccatgcataaagtggacttaacggatgacacagaaaaggaagtaataaaagagttg
tacgaaaacgccattcaaattttagctgatgatgatagggctttaccacaggtccagttt
attcttcctctcctcttaagaggtataggaattcatcatggtggcctactaccaatcatt
aaagaaataattgaaattatgtttcaagaatcactgctcaaagttctattcagcacagaa
acattctccatgggtattaacatgccagccaaaacggtcgtttttacctccttgagaaaa
tttgatggagtagaaaaacggttaataacatcgggggagtatattcaaatggcaggaaga
gcgggtagacgtgggttggacgacagaggtatcgttatcattatgttggatagcccacta
cattggagagaggcggaaaagttattcgtaggggaagccaacagattagtcagtcagttc
catttggggtacaacatgattttaaatctactccgaatagaaggaattacaccagagttt
atgattgagagatccttcattcagtaccaaatgaaaaaaagcctcttccagaaaattctt
gccaaaaaaaaagtagaagaaaaaattaaagaaatatttaaccagctgactagtgtctac
ctggataaggatgatcaggagatcagtaaaggaaatctcttgaagaaaattatggatcct
aattatgagtgcacctcccccgcgggggaagagatgagtgctcttcaatcagtgtacacc
caacatggtgaccaaaatagcaacatggaagaagatctatcctccggagagaaagcagaa
ataactatcaacgaggaggatattcaagagaaagagggtacccactccgaacacaccctc
gacaccatgaatgatgaactcaaaaactacaacactgtattttcctgcatttccaattat
tacatattaagaaacaagcttatcgatctgggggaaacgtacaggtctattctaacggcc
aggaagaatatcaccccgtacttggccatgggacgactgctctacctggtggaggacgac
ttgaggtggggttgggccatatgcattgaaggaaaaattgttgagcaagccaatcgaggt
cgcagcgctggtcgaaacaacgccctgaggagcgccaacgcgacaaacaccactaacccc
gctaatgcggaagatgccgatgtactgctcgtggattgtctagtaccctacagccaaaac
agaaaaaggaaacggttccagggggatgacggtgatgttagtggggaggatgatgtggat
gagttgcccgaaggtacgcagaaggaatttgttccggccaccgacaggatgaaggccaag
tggaaactcatcaccttccacatcaagtgcatctaccagatttctgctgtcgtcttaaac
ctagagaagccatttgacaaaaaaaatgaagaacaaattatgagcgccaaaatgaagtat
aacaccatggtgaagtgcttgaaaggagaaaaaaatatccctgtcattaacccccaccag
atggaaatcaaagatgaagcttttctaaaagtcgtaaaaaatataaactaccacgaacag
atgttaagtagaaataaattactaaacagtcgaaatttacacaagtactaccaactgtac
aatatgtatgtagctttgcaatttgaaaagaaccttttagaggccaatatagaaaagtgc
agatttatagtcttaaagaaggaacttaaaaatatgcttgtccttctgcaaggtttgaat
tatatagaaatttcacacaatttggaaggggaaaatgcgcaacaggggataaatgcccag
gaaatcaatatggagaaagtcgaaaggcaggaaatcaaaggagaccaatcgacttaccag
aacgaactggagagcggagggaacttcaccagagaggaagaaaaaagctacgttgtaacg
atgaaaggacaaatagccagtgccatcctcagtgtggatgaattagttatttcggaatta
tttttctccaacttttttagtaaatacaactacgactacatatgtgctttcctctcctgc
tttgtttatgacgaatccacaaacaaagaggtagccattgaagacccaattcttgtggag
ggatacgaacagataattagaacagccacccacgtttcgaataaaatgaacgaatgtgga
atgagcatgaatttgaaggattacctggacaagttcaagtctgcaatcatgcccatagtc
ttacaatgggtacgcggctactctttcatggaaattcttactgactcgcagatatacgag
gggtctatcatacgtacgctcaggcgcctggacgaacttctcagacaaatgatctgcgcg
tttagaggaatcaacaacgacagcatgtgcgaaattttgacagaggcgacaaaaaaactg
agacgaggcatccccttctcaccctctttgtacttataa
DBGET
integrated database retrieval system
