Plasmodium knowlesi: PKNH_1243900
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Entry
PKNH_1243900 CDS
T01094
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3, putative
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PKNH_1243900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkn03021
]
PKNH_1243900
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_1243900
Transcription machinery [BR:
pkn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PKNH_1243900
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PKNH_1243900
U7-dependent histone pre-mRNA processing factors
PKNH_1243900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
RMMBL
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
Beta_lactamase3
Lactamase_B_2
Lactamase_B_3
PcfK
DRMBL
ARGLU
Motif
Other DBs
NCBI-GeneID:
7322092
NCBI-ProteinID:
XP_002260489
UniProt:
A0A5K1URD6
A0A384LF13
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All DBs
Position
12:<1954646..>1957462
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AA seq
938 aa
AA seq
DB search
MNNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCL
ITHFHMDHSGALPYLINRTRFKGKVYMTEATKSICYLLWNDYARIEKCMHMMNKMKGSRN
KNEVGENETDEYGNKIKRGGVYSSDEYGSEDNEDDDYYQSYICEMGDGDIKHNVLYDEND
INVAMKRIETLNFHEHIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYSREVDRH
IPIAEIPTIDVHVLICEGTYGIRVHDDRKKREVRFLNMITSILNNKGKVLLPVFALGRAQ
ELLLIMEEHWEKNTQLQKIPIFYISSMATKSLCIYETFINLCGDFVRHVLNEGKNPFNFK
YVKYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAPDKKSGVILTGYTVKG
TLAHELKTEPEYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIEKLKCPNVVLVHGDRN
ELNRLKNKLTEEKKYLSVFTPELLQRLTFRFEHSDHVVSLGQISQHIRYLARRREVLQGK
ELDAADEINVVRDANRGDAIDAAVAIDATDATGATGEKGKEQSGGRPPPEANTNRGGEKL
SDRNGEEKTIPNGVDAIIISEPKAIPIMIYAKDIYEYTNLKTALIDQTISIKFPHKFELL
YHMLRGVYEETHMEDGDSGSGNGDKGGAVIFVQDVKIHYCSAEKVISINWLSSPVNDLVA
DSINFLILEFLDTMKNNNHLSICNEVTDDEIYEMIISYVKENYTNVERFSKVELKRFLLE
NSSDSPEKGRKEEAKDAYEDGLDNLKNDQSYSSGRINQMDHNKMEEEEVDLCEDHDEKSG
HRDRMKKFRSLDKILFDYIAADASLAMSTDEEEPVVRVLNGGMLYEILKFEVKDNNNKDV
NVYVDIDNREVICEEVTILLKIREILKNIEESLLPMCF
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacatcaacatcgtgtgcctgggtggcgcgagcgaagtgggtcgttcgtgtgta
attatagaaagtgcgaataggtcaatcatgttggattgtggaattcaccctgcctttatg
gggataggatgtttacccatctatgacgcgtacgacatttcgaaggtggacttatgttta
ataacacattttcacatggaccacagtggtgccttaccgtacctaattaacagaacccgt
tttaaagggaaggtatacatgaccgaggcgacgaaaagtatctgttatttattatggaac
gactatgcgcgaattgaaaaatgtatgcacatgatgaataaaatgaaaggaagcagaaat
aaaaatgaagtgggtgaaaatgaaacggatgagtacggaaacaagattaaaaggggagga
gtatactccagtgatgagtatggaagtgaagacaatgaagacgatgattattaccaaagt
tacatttgtgaaatgggagatggagatataaagcataatgtactgtatgatgaaaatgat
ataaatgtagcgatgaaaaggatagaaactttaaattttcacgaacatatagaatttgag
gatgtaaaatttacagcatatagagcaggacacgtcattggtgcatgtatgttcttggtg
gaaataaataacatacgttttttgtacacaggggattatagcagggaggtggataggcat
attcccatagcagagatccccactattgatgttcacgtgttgatttgcgaagggacatat
ggaataagagtgcatgacgatagaaaaaaaagggaagttcgcttccttaacatgattaca
agtatattaaataataaagggaaagtgttactcccggtgtttgcactagggagggcccag
gaattgctactaattatggaggaacattgggaaaaaaacacacagctgcagaaaataccc
attttttacatttcctccatggctacgaaatcgttatgtatatatgagacattcataaat
ttgtgcggagattttgtacgacatgtacttaatgaaggaaaaaatcctttcaattttaag
tacgtgaaatatgcgaaatctttggactccattttgaattatttatatcaagataataat
ccatgtgttgttatggcttcgcctggtatgctacagaatggaatttctaaaaatattttt
aacatcattgcacctgataaaaaaagtggagttatccttactgggtatacagttaagggg
accttggcccatgagttaaaaactgagccggagtatgtcctcattaacgacaaaccggtt
aagaggaggtgtcgcttcgaggaaatatcctttagtgctcattctgattttaatcaaacc
aaaacatttattgaaaagttgaagtgtccaaatgtggttcttgtgcacggggataggaac
gaattgaacagactgaaaaataagctaactgaggagaaaaaatacctgtctgtttttacg
cccgagttgctgcagaggctgacttttcgctttgagcacagtgaccatgtggtatccctg
ggtcagatttcccaacatattcggtatctggctcgacggagggaggtattacaagggaag
gaattggatgcagcggatgaaataaacgtggtgagggacgcaaatcgaggcgatgcaatt
gacgcagctgttgcaattgacgcaactgatgcaactggtgcaactggggagaaagggaag
gaacagtcagggggacgaccccccccagaggcaaacaccaacagggggggtgaaaaactg
agcgacagaaatggagaggaaaaaacaattcccaatggagtggatgccataattatatcg
gagccaaaggccatccccattatgatttacgccaaggatatttatgagtatacaaatttg
aagactgctttgatcgaccagacgattagcataaaattcccccacaagtttgagctcctc
tatcatatgttgaggggggtgtatgaggaaacgcatatggaggatggggatagcggcagt
gggaatggtgacaagggaggagcggtcatcttcgtgcaggacgtaaaaatccactattgc
agcgcagagaaggtgataagtattaattggctttcaagcccagtgaacgacctagttgcg
gacagcatcaattttctaatactagaatttctggacaccatgaagaataacaaccaccta
tccatctgcaacgaagtaacagatgatgaaatttatgaaatgatcatttcgtacgtgaag
gagaattataccaatgtggagagattttccaaagtggagttgaagaggttccttttggaa
aatagcagtgatagccccgagaagggaagaaaagaagaagcaaaggatgcatacgaagat
gggttagataatttgaagaatgaccaatcatattcatctggtaggataaaccaaatggat
cataacaaaatggaagaagaagaagtagatttgtgtgaggatcatgatgaaaaaagcggg
catagagacagaatgaagaaattccgctcccttgataaaatattatttgattacatcgcg
gcagatgctagtttagccatgtccactgatgaggaggaacccgttgtgcgtgttctcaat
ggcgggatgctttatgaaatactgaagtttgaggtaaaggacaataacaacaaggatgtt
aatgtgtacgtcgatatagacaaccgggaagtcatatgtgaggaagttacaattttgtta
aaaattagagaaattttaaaaaatatagaggagtccctattgcccatgtgcttttag
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