Plasmodium knowlesi: PKNH_1429400
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Entry
PKNH_1429400 CDS
T01094
Name
(RefSeq) CCR4-associated factor 1, putative
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKNH_1429400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkn03019
]
PKNH_1429400
Messenger RNA biogenesis [BR:
pkn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PKNH_1429400
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PKNH_1429400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
7323071
NCBI-ProteinID:
XP_002262177
UniProt:
A0A5K1U7G2
A0A384KUL3
LinkDB
All DBs
Position
14:complement(<1272230..>1278145)
Genome browser
AA seq
1971 aa
AA seq
DB search
MDERTKIVDVWANNLEEEFERIRDVVENHPYVAIDTEFPGIVARPTGNVVDYNYQTIKCN
VDLLKVIQLGVTFSNGKGELPNVSTWQFNFKFDLESDMYAQNSIDFLKHSGINFEKHQSL
GIELLHFGEIIMSSGLVMNEDVKWISFHGCYDFAYLLKILTCCALPHNEIAFFDLLNDFF
PSLYDIKYFLLNLNIKQLSRTYSLQKISEILSVKRIGRQHQAGSDSLVTCKTFFKLLELY
FDNQIDDKKYSGIIYGLGSTIKNYNPKLEDSPHKINNSNHYGNGYVKGNNNAHGSSGHYG
CGYSSNYDCNYSGSHSVNHSGNHSCNHSCNHSGNHSCNHSCNHSGNHSDNNDSEERSREC
NHMYMDGNNCMMHTQNHMLTSYQGNKEYQISFSKDAVKGNFKSDMLYNLYADMNQNNYNT
IANVGNMIQNNINGFASYENDATNNRDFIKYSSQPQLLNMSTANAKSLRVLANSDVHTNS
LSGGDSGSNSANGNGSGNGSGNGSRNGSGNGSGNGSRNGSGNGSRNGSGNGSRNGSGNGR
GNGSRNGSGNGSGNGRGNGRASGKNSGKGGGKGDNKGEGKGNAKNSNKNNNKNNGKNNSN
GDGNSKNGSNSRGNNGGNNGGNNEGNNGGSSGGNTGGNGTGHSGGHGGGQNSGHNGGNGN
SHTNGHSGGNGNNHGNNKGNGKNKYNNNTSNNTNINNNGRDFISLAGNSNKSSLDNSTKP
LKNVFNDLPKRPSNDNLNNDNWRNDNLSSDNWRSDNFRNDNLSDHFSTANVNSSSEPLRN
MNGVGGTTNRNFTNPSGNIISLNSANMSVSSMKNSILLNNLSSLSGTNSNVSISGKSGLS
SKGSMQSKKGAIGKNGSVGKNNVVGLSMSSLNNPVVLPNGLSVGTTGINLANINNGMVVN
NMDVNNMRMNNLSSNVSVNRVPAANVGNINLKQSSISVSMNNRNANNSCSVSTVSEVNGR
QSGSMKSVNISEESIIDAVKGDYEVDNSNPMPQNGIALSSMYVPNMNYANGGGNGNHKNS
ASANGSGKNSSKKNNSSNGSDIGPFLNSVNLGAANMASNPPLQMNSNVSNFKQYPMPNKY
NSFSNYPTSVSNPNDKGTTEDSEIDEALFDGAGGMGIVGNGINSGSGNGHGNGHGNGNGN
VGNSGANANGKNALNKNGMNKVNMAHISYGKNIIPSGVNGNSNFKGSHKSNTLMNSEMPG
GLMQNGNLISKNNELSSGNFDAMSDLPPNMTMLRDDNSKDEKMNNLNKGAMGSFPVKHPP
PPPPPPPPPSSCNLTNVMSNGNQNNSGEKAKNNSIMKNLSSSSSNNTGNANLSNGAHPIS
GNEAKICNLGMGSASYTSNHLLKHNMSLSNLGNVSGSNKLNLANMANPNSSGVIKNNSPG
PVGPAGANGGVRALGTNIVPVYNATNKGPLDNGEANMNPSFNMNGSNKNNKNCNQLSSTT
NERNSKNNAKEGNGKNTVLLVNSSVSEEAYNVDEGIIANGGTLSSANSLYNGSPKNSGDQ
AKGRTNTNTTSDSANNGKNGKGGKNGNKNHKHSKNKNKGANGGINIGGVTNATTANGGST
VIKKRSNEKNAADKMNISNLEQNNNYDSVSQKKNGNKIFANIVREEEEGKFSSGNVVSND
EKKNAPIDRNEHKSLLNNMNYFKGDNVKMYNRGGIGAGSGAAPVAGPYGKNGAHHLGVKN
NFLNSPTCDSESMLHNISSVNIINDMNTSDIMNPSNVQNYANSGSASDVNADIHYLGSMN
NSKGGNNYAEVLHGKMNNLNIMNISKMHSGTYSVNNNVGPLSGGLGGRHNGKHNSSSIAE
NTSTNGGAFNFVNKKTSKDNLSMINHAMMNNLNLNNIYANSDTKAFNKMNVNHKGGGSVS
NSNFCFNGEGATGVVARNQPYYNSYAESFPDKITNKSFIEKSGNIIPSSIYNGKREEPSI
SMYNYVDSNNFLEKNAILADKYEPMESPQGNMFNYASYEYKNKERKFFYDA
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atggacgagagaacgaaaatcgtagacgtatgggcaaataatttagaggaggaatttgaa
cgaatcagggatgtagtcgaaaatcatccctatgttgctatcgacacagaatttccagga
attgttgctaggccaacaggaaatgtagtagattataattaccaaacaataaaatgcaat
gtagacctattgaaggttatacaattaggagttaccttttccaatggaaagggggagcta
cctaacgtatcaacatggcaattcaattttaagtttgatctagaaagtgatatgtatgcg
cagaattctatagactttctcaagcacagtggaatcaattttgaaaaacatcaatcctta
ggaatcgaattattgcattttggggaaattatcatgtcctcaggtttagtgatgaatgaa
gatgtcaaatggatatccttccatggttgttatgattttgcttatctgttaaaaatacta
acatgttgcgctttacctcataatgaaattgccttttttgatttactgaacgattttttc
ccttcgctatacgacataaagtactttctgctaaatttgaacatcaagcaattaagtaga
acctactccttgcagaaaattagcgaaattttaagtgtaaaaaggataggaagacaacat
caggctggttcagattccctcgtgacatgtaaaacatttttcaaattgttggaactttat
ttcgataaccaaatagatgacaagaagtattcgggcattatatacggcttgggatccact
ataaaaaattacaatccaaaattggaggacagtccacataaaattaataattcaaatcat
tatggcaatggctacgtgaagggaaataataatgcgcatggaagtagtggccactatggc
tgcggctatagctccaattacgattgcaattatagcggaagtcacagtgttaaccatagt
gggaaccacagctgcaaccacagttgtaaccacagcggcaaccacagttgtaaccacagc
tgtaaccacagcggcaaccacagcgataacaacgacagcgaggaacggagcagagaatgc
aaccacatgtacatggatggaaataactgcatgatgcatacacagaaccatatgctgacc
tcctatcaggggaataaggaataccaaataagtttcagcaaggacgcagtcaagggcaat
tttaaaagtgatatgctgtacaatttgtatgcagatatgaaccaaaataactacaacacc
attgcgaatgtaggcaatatgatccagaacaatattaatggcttcgcttcatatgagaac
gatgctacaaataatcgagattttatcaagtatagctcccaaccacagttgcttaacatg
agtactgcgaatgccaagtcgctgcgggttctggctaatagcgacgtacatacgaacagc
cttagtggaggtgacagtggaagtaacagtgccaacggaaacggtagcggaaacggtagc
ggaaatggtagcagaaatggtagtggaaatggtagcggaaatggtagcagaaatggtagc
ggaaatggtagcagaaatggtagcggaaatggtagcagaaatggtagcggaaatggtaga
gggaatggtagcagaaatggtagcggaaatggtagcggaaatggtagagggaatggtagg
gcgagtggcaaaaatagcggcaaaggtggaggaaaaggcgacaacaagggtgagggcaaa
gggaacgcaaaaaatagtaacaaaaataataacaagaacaacggcaagaataatagtaac
ggcgatggcaacagcaaaaacggaagcaacagccgaggcaataacggaggcaataacgga
ggcaataatgagggaaataacggaggaagcagtggtggcaacacaggcggcaacggcaca
ggtcatagcggtggtcatggtggaggccagaatagtggccacaacggaggaaacggaaat
agccatacgaacggtcacagcggagggaatggcaacaaccacggtaacaacaaagggaac
ggaaaaaacaaatacaacaacaacacaagcaacaacacaaacatcaacaacaatggcagg
gacttcatcagccttgcaggaaattccaacaaaagcagcttagacaacagcaccaagccg
ctcaaaaacgtttttaatgatctgccgaaaaggcccagtaacgataatttgaacaacgat
aattggaggaacgataatttgagcagcgataattggaggagcgataattttaggaacgac
aatttgagcgaccattttagcacagccaatgtcaacagcagtagcgagcctttgagaaat
atgaatggagtaggaggaacaaccaatcgtaattttaccaaccctagtggaaacatcatc
agtttgaatagcgccaacatgagtgtgagcagcatgaagaactccatcctactaaacaac
cttagcagtttaagtggcacgaatagcaatgttagtataagcgggaagagtggcctatct
agtaaaggctctatgcaaagcaaaaagggcgctattggaaaaaatggttcagtaggcaaa
aacaacgtagttggtctcagcatgagcagcttaaacaaccctgtggtacttccaaatggt
ttaagtgtaggtacaactggaataaacctcgcaaatataaataatggcatggtggttaac
aatatggatgtgaataatatgcgtatgaacaatttgagtagtaatgtgagcgtgaaccgt
gtacctgcagctaatgttgggaatataaatttgaagcaaagcagtatcagcgttagcatg
aacaacaggaacgccaacaacagttgcagcgtcagcactgtgagcgaggtgaacggaagg
caaagtggctccatgaaaagtgtaaacatatccgaagaaagtattatagatgcagttaag
ggggattacgaggtggacaacagcaatcctatgcctcaaaacggaattgcattaagcagt
atgtatgtacccaatatgaactatgccaatggcggaggtaacgggaaccataagaatagt
gcaagcgcaaatggaagtggaaagaatagcagtaagaagaacaacagcagcaatggcagt
gacattggcccatttttaaatagcgtaaatttgggtgcagccaacatggctagcaatcca
cccctccaaatgaacagtaacgtaagtaattttaagcagtaccccatgccaaacaagtac
aactcgtttagcaactaccccacaagtgtaagcaaccccaatgataagggcactacagaa
gattctgaaatagatgaggcattgtttgacggagctggcggcatgggtattgttgggaat
ggaattaacagcggcagtggtaacggtcatggtaatggtcatggtaatggtaatggtaac
gttggaaacagtggtgcaaatgcgaacggaaaaaacgctttgaataaaaacgggatgaac
aaagtaaacatggcacacataagttatggcaagaatataattccaagtggtgtaaatggc
aatagcaattttaaggggagccacaaaagcaataccctcatgaacagcgaaatgcctggt
ggcctaatgcagaatggtaaccttatcagcaagaataatgaattgagtagtgggaatttt
gacgctatgagtgacctaccgccaaatatgacaatgctcagggatgacaactccaaggat
gaaaaaatgaacaacttaaacaaaggtgcaatggggagttttcccgtaaagcatccaccc
ccacctcctcctccacctcccccaccatcttcatgcaatttgaccaacgtgatgagcaac
ggaaatcaaaacaacagtggcgaaaaggctaaaaataattccatcatgaaaaatctgagt
tcatcttcctccaacaacacgggcaatgctaacttgagcaacggggctcatccaatcagt
ggcaacgaagcgaaaatttgtaacttgggaatgggttcagctagctatacatcgaaccac
ctgctgaagcataacatgagcctcagcaatttgggcaatgtcagtggaagcaacaaactg
aatttagccaacatggctaacccgaatagttccggagttattaagaacaactcgcctggt
ccagttggtccagctggtgccaatggcggtgtgcgcgcattaggcacaaatatcgtccca
gtatacaacgcaacaaacaaagggccccttgataatggcgaagccaacatgaaccctagc
ttcaacatgaatggttcaaacaaaaataacaaaaattgtaatcagctgagcagcaccaca
aatgagaggaatagcaaaaataatgcgaaagaaggaaatggcaaaaatactgtcttgtta
gtaaatagtagtgttagtgaagaggcctataatgttgatgaaggtatcattgccaatgga
ggtacattgagcagtgccaatagcttgtacaatggaagcccgaaaaatagcggagaccag
gccaagggaagaaccaacacgaataccacgagcgatagcgccaacaatggaaagaacggc
aagggtgggaaaaatggcaacaagaaccacaaacatagtaaaaacaaaaataagggcgcc
aatggggggattaacatcggaggtgttacaaatgcaacaacagcaaacggaggcagcacg
gtcatcaagaaaagaagtaatgagaaaaatgctgcagataaaatgaatataagtaacttg
gagcagaacaataactatgattcagttagccaaaaaaaaaatggaaacaaaattttcgcc
aacattgtaagggaggaagaagaaggaaagttttcaagcggaaatgtggtttcaaatgat
gaaaagaaaaatgccccaatagatagaaatgaacacaaaagccttttaaataatatgaat
tatttcaagggagataatgtgaaaatgtacaataggggaggaataggagcaggtagtgga
gctgcacctgtagcgggaccgtatggaaaaaacggtgctcatcatttaggcgtaaaaaat
aactttctcaatagccctacgtgcgatagcgaaagtatgctgcataatataagtagtgta
aatataattaacgacatgaacacttctgacattatgaacccatcaaatgtgcagaattat
gccaacagtggtagcgccagcgatgttaacgcggatattcattaccttggcagcatgaac
aatagcaaaggtggaaataactacgccgaagttttgcatggaaaaatgaataacttaaat
atcatgaacataagtaagatgcacagtgggacttattcggtcaataataacgtgggccct
ttgagcggtggtctaggcggccgccacaatggcaagcacaacagcagtagcatagccgaa
aatacgagtaccaacggaggcgccttcaattttgtgaacaagaaaacgagcaaggacaac
ctaagcatgataaaccatgccatgatgaataacctgaacttaaacaacatttatgcgaac
agtgacacgaaggcgtttaacaaaatgaatgttaaccacaagggaggaggtagtgtaagc
aactccaatttttgttttaacggtgaaggtgcaacaggtgtagtagctcgaaatcagcca
tattacaattcatacgctgaatcgtttccagataaaataacgaacaaatcatttatcgaa
aagagtggtaacataataccttcttccatttataatggtaagagggaggaacccagcata
agcatgtataactacgttgatagtaataactttttggaaaagaacgcaattcttgcggac
aagtatgagccaatggaatcaccccaaggtaacatgttcaactatgccagttacgaatat
aaaaataaagaaagaaaatttttttacgatgcatag
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