Pontibacter korlensis: PKOR_02705
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Entry
PKOR_02705 CDS
T03841
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pko
Pontibacter korlensis
Pathway
pko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKOR_02705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pko03019
]
PKOR_02705
Messenger RNA biogenesis [BR:
pko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PKOR_02705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF4954
DASH_Hsk3
Motif
Other DBs
NCBI-ProteinID:
AKD02242
UniProt:
A0A0E3UV60
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All DBs
Position
complement(656760..658358)
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AA seq
532 aa
AA seq
DB search
MPDILYIVLTALVALGVGVYIGRSLLQKLYKQQEEEARQKAKSIIREAEINAEAIKKDRI
LEAKEKYLKMKAEFEEEMSKKKNIIIQNENKVKQREQHVSKQMEQAKRLEADLHKEKEQL
HAELEKEKNHLHAQHEQLKKRKEEVEQQHEEVVSQLEKIAGLTASEAREQLVEALKNEAQ
SHASSHIKDIVAQAKLTATKEAKKIVIETIQRTAAEHAIENCVSVFNIESDDIKGKIIGR
EGRNIRALEAATGVEIIVDDTPEAIIISGFDPVRREIARLSLHRLVADGRIHPARIEEVV
TKTRKNIEEEIVEIGERTAIDLGIHGLHPELIKMVGRMRFRSSYGQNLLQHSREVANLCA
TMAAELGLNVKHAKRAGLLHDIGKVTPDEPELPHAIIGMELAKKYKEHPDVCNAIGAHHD
EIEMTAMVSPLVQACDAISGSRPGARREIMESYIKRLKELEEAAVSFEGVNQCYAIQAGR
ELRVMVDADNVTDEKAAQLSFDISQKIEKEMQYPGQIKITVIREMRAISYAK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatatcctttacattgtattaacagctcttgtggcgctcggagtgggcgtatac
atagggcgctccctgctgcagaaactttataagcagcaggaagaagaggctcgccagaag
gccaagagcatcattcgtgaggcagaaatcaatgccgaagccataaagaaagaccgcatt
ctggaggcaaaggaaaaataccttaaaatgaaagccgagttcgaggaggagatgagcaaa
aagaagaacatcatcatccagaacgagaacaaagtaaagcagcgtgagcagcatgtgtct
aagcagatggaacaggctaagcgcctggaggctgacctgcacaaagagaaagagcagctg
cacgcagaactggagaaggagaaaaatcacctgcatgcacagcatgagcagctgaaaaag
cgcaaggaggaggtagagcagcagcacgaggaggtagtgagccaacttgagaagattgct
ggccttactgcttctgaagcccgtgagcaactggtagaggccctgaaaaatgaggcacag
tcacacgcttcttcgcacatcaaagatatagtggcacaggctaagcttactgctactaaa
gaagccaagaaaatcgttatcgaaaccattcagcgtactgccgctgagcatgccattgag
aactgcgtatcggtattcaacatcgagagcgacgatatcaaaggtaagatcattggccgt
gaaggacgtaatatccgtgcactggaggcagcaacaggagttgagattatcgtagacgac
acccctgaagcaatcatcatttctggattcgatccggttcgtcgtgaaattgcacgtctg
tcgctgcaccgcctagtggccgacggtcgtatccaccctgcccgtattgaggaggtggtt
actaaaacccgcaagaacattgaagaggagattgtggagatcggtgagcgtactgccatc
gaccttggaatccacggtttgcacccagagctgatcaagatggtaggccgtatgcgcttc
cgttcgtcttatggtcagaacttactgcagcactcacgtgaagtggcaaacctttgcgct
accatggctgccgagcttggccttaatgtgaagcatgcgaaacgtgccggtctgttgcac
gatattggtaaagtaacgccagatgagccagagctaccacacgctattatcggtatggaa
ctggccaagaagtataaagagcatccagacgtttgtaacgccataggtgcgcaccacgat
gagattgaaatgaccgcgatggtctctccactagtgcaagcctgtgacgccatctctggt
tcaagaccaggtgctcgtcgtgagatcatggagtcgtacatcaagcgtctgaaagaactg
gaggaagctgccgtttcttttgaaggtgtaaatcagtgctacgctattcaagctggccgc
gagctacgcgtaatggtagatgccgacaatgtaactgatgaaaaggctgcacagctgtct
ttcgacatctctcagaagatcgagaaagagatgcagtatcctggccagatcaagatcacg
gttatccgcgagatgcgcgccatcagctacgctaagtaa
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