Pontibacter korlensis: PKOR_08440
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Entry
PKOR_08440 CDS
T03841
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pko
Pontibacter korlensis
Pathway
pko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PKOR_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pko03021
]
PKOR_08440
03400 DNA repair and recombination proteins [BR:
pko03400
]
PKOR_08440
Enzymes [BR:
pko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PKOR_08440
Transcription machinery [BR:
pko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PKOR_08440
DNA repair and recombination proteins [BR:
pko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PKOR_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DHC_N2
Motif
Other DBs
NCBI-ProteinID:
AKD03143
UniProt:
A0A0E3ZDD2
LinkDB
All DBs
Position
1963547..1967863
Genome browser
AA seq
1438 aa
AA seq
DB search
MAFAKNKKLTQDFSKVTISLASPESILERSNGEVTKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGILAEDGVNTLDFLTEDEYLDMVDKLPRENQMLDN
NDPNKFIAKMGAEALQMLLERIQLDDLSYELRHAAAHETSQQRKAEALKRLRVVEAFRDA
TTRIENRPEWMIIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAVLEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVSKGKRSTENEKID
GEGMSFYSAEEVVIAINEKRISKHAYIKVRAKVKNENGELETKLIETVAGRVIFNQFVPE
EVGYIDELLTKKKLQQIISRVFKETGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDINIP
AEKEILVEQAKKDVDAVWQNYSMGLITDNERYNQVIDIWTRINNQITETLMRRLENENQG
FNSIFMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEEDCGTLRGLEVSALKDNEDI
VESLSERILGRVAVHDVYDPVTNDLIVESGTEITEEVARAIENTAIESVEIRSVLTCESK
RGICAKCYGRNLATGFMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDATIL
AKFGGRIEFEDVRSLDTVNNEGEPVKVVMGRSGEVKIVDPNTGKLLISNHVPYGSFLHVN
EGQIIEKGAQLCNWDPYNAVILSEFDGEISYESIIEGITYREESDEQTGYREKVIIDTKD
KTQNPAIVVNPKNGESKGYNIPVGAHLTVENGEKIKAGQILAKIPRAIGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGSVKRGNREIFIESKDGVKKKYMVPLSKHILVQDN
DFIRAGMPLSDGAITPTDILNIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVVRQMM
QKVVVVDPGDTSFLENQTVDKVSFMEENDHIIDMKVVEDAGDSANLKPGQIVTPRRLRDE
NSSLKRRDLKLVTVRDAQPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAAIKGK
ADELLGLKENVIVGHLIPAGTGLREYQNLIVGSQEEYDTLVESKKSTSKAKQQELQNK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgcgaaaaacaaaaagctaactcaggacttctctaaagtaacgatcagcttg
gcttcgccggagtcaatcctggagcgttccaatggagaggtaactaagcctgagaccata
aactatagaacctataagcctgagatgggtggtctgttctgcgaaagaatattcggaccc
gtaaaggactgggaatgccactgcggaaagtataaaagaatcagatacaaaggcatcatc
tgcgaccgttgcggcgtggaggtgacggagaagaaagtgcgccgcgagcgtatgggccac
attgaattagtggttccggtagcgcacatctggtacttcaaatctcttccaaataaaata
ggttatctgttaggccttccaacaaagaagcttgaccagatcatctactatgaaagatat
gtagttatccagccaggtatccttgcagaggacggtgtaaatacactggacttcttgaca
gaggacgagtacctggatatggtggataaactgcctcgcgagaaccaaatgttggataat
aacgatccaaacaagtttatcgcgaaaatgggtgctgaagccctgcaaatgctcttagag
cgcatccaactggacgacctttcttatgagctgcgtcatgcggctgcacacgagacttcg
cagcagcgtaaagctgaggccttgaagcgtcttcgtgtggtagaggcgttccgtgatgct
actacacgaatagagaacagaccagaatggatgatcatccgcatggtgcctgttattcca
ccagagcttcgtccactagttccattggatggtggccgtttcgctacatctgacttgaac
gacctgtatagacgtgttatcatccgaaacaaccgtctgaagcgtttgatagagattaag
gctcctgaagtaatccttcgtaacgagaagcgaatgctgcaggaagcggtagactcactg
tttgacaactcacgtaaagtaaacgctgttcgtgcagagggtaaccgtgcgctgaagtca
ctttctgacatgctgaaaggtaagcaaggacgtttccgtcagaacttacttggtaagcgt
gttgactactctggccgttcggtaattgtagttggtcctgaactgaagctgcacgagtgc
ggtctgcctaagaatatggcagctgagcttttcaagccgttcatcatccgcaagctaatt
gaaagaggaattgttaagactgtaaagtctgcaaagaaaatagtagatcgtaaggaccct
gtagtttgggatatcttggagaacgtgctgaaaggccatccagtactcctaaaccgtgct
cctacactacacagattaggtattcaggcattccagcctaagctgatcgaaggtaaggca
attcagttacacccattagtgtgtactgcgttcaacgccgactttgacggtgaccagatg
gcggtgcacgttccactaggacctgctgctgtactggaggcatctatgctgatgcttgct
tcgcataacatcctgaaccctgctaacggtgctccgattgcagtaccttctcaggacatg
gtacttggtttatactatgtatctaaaggaaagcgcagcacagaaaatgagaaaatcgac
ggagaaggtatgagcttctactctgcggaggaagtggttattgccatcaacgagaagaga
atctctaaacacgcctatatcaaggtaagagctaaagttaaaaacgaaaatggtgaactg
gagacgaaactgatcgaaacagttgccggtcgtgtaatctttaaccagttcgtaccagaa
gaggtgggttatatcgatgaactgctgactaagaagaaactgcagcagatcatctctaga
gtattcaaagagacgggtatggcccgtacagctcagttcctggatgatatcaaaacactt
ggattccagtctgcctataaaggcggtctttctatgggtcttggtgatatcaatattccg
gctgagaaagagatactagtggagcaggctaaaaaagacgtagatgctgtatggcaaaac
tactctatgggtctgatcactgacaatgagcgttacaaccaggtaattgatatctggacg
cgtatcaacaaccaaattactgaaacgttgatgcgccgtcttgaaaatgagaaccaaggc
tttaactccatctttatgatgatgcactctggagcccgtggttcgagagagcagatccgt
cagttgggtggtatgagaggtctgatggctaagcctcagaaatcattacaaggttccgta
ggtgagattattgagaacccgatcctatcaaactttaaagaaggtctggatgtaatcgag
tacttcatctctacacacggtgcacgtaaaggtcttgccgatacggctcttaaaactgcc
gatgctggttacctaactcgtcgtctggtagacgtgtctcaggacgtgatcgttaacgaa
gaggactgcggtactctaagaggtctggaagtaagtgcactgaaagacaacgaagatatt
gtagagtctctatcagagcgtatcttgggtcgcgtagctgttcatgatgtatacgatcca
gttacgaatgatctgattgtagagtcaggaacagaaatcacagaagaagtagcccgagct
atcgagaatacggcaatagagtctgtagaaattcgctcagtacttacttgtgagtctaag
cgtggtatctgtgctaaatgctacggccgtaacctggcaacaggctttatggtgcagaaa
ggtgaggctgtaggtgtaattgcagctcagtctatcggtgagcctggtacacagctgact
cttcgtacattccacgtgggtggtacagcatctaacattgcggtagatgcaactatcctg
gcgaagttcggaggtagaatagagtttgaagatgttcgctcactggatacggtaaacaat
gaaggcgagcctgttaaagtagttatgggtcgttcaggcgaggttaaaatcgttgacccg
aacacaggtaagcttttgatcagcaaccacgttccttatggttcattcctgcatgtaaat
gaagggcagatcattgagaaaggagcacagctgtgtaattgggatccgtacaatgcggta
atcctttctgagttcgatggtgagatttcttacgagtcgatcatagaaggcatcacatac
cgtgaggagtcagacgagcagacaggttaccgtgagaaagtgattatcgatacaaaagat
aagacacagaacccggcaatcgtggttaatccgaaaaatggtgaatctaaaggttacaat
ataccggtaggtgctcacttgacagtagagaacggggagaaaatcaaagctggtcaaatc
ctggcgaaaatcccacgtgctatcggtaaaacacgagacattacaggcggtcttccacga
gttacagaattgtttgaagctcgtaatccatctaacccagcggtagtgtctgagatcgat
ggtgtagtaacatatggtagcgtgaagcgtggtaaccgtgaaatcttcatagagtcgaaa
gatggcgtgaagaaaaagtacatggtgccgctttctaagcacatcctggtacaggacaat
gactttatccgtgctggtatgccgttatcagatggtgctatcactccaacagatatcttg
aatatccaaggtccgggtgcagtacaagagtacctggtgaacgaaattcaggaagtatat
cgtctgcagggtgtgaagatcaatgacaaacacattgaggttgtagtacgccagatgatg
cagaaggtagtagtggtagacccaggtgacacaagcttcctggagaaccagacggtagac
aaagtatcctttatggaggagaacgatcacatcattgatatgaaagtggttgaggatgcc
ggtgattctgcaaacctgaagccaggtcaaatagtaacaccacgtcgtctgcgtgatgag
aactcaagcctgaagcgtcgtgacttgaaactagtaacggtgcgtgatgcacagccagct
gtttctcgtcctacactacaaggtatcacacaagcttcgttgggtactcaaagctttatc
tctgcagcatcgttccaggaaacaactaaagtattgagcgaagcagcgatcaagggtaag
gcggatgagttgctaggactgaaagaaaacgtaatcgtaggtcacctgatacctgcaggt
acaggtctgagagaataccagaacctgatagtgggaagccaggaagagtacgatacgcta
gttgagtcaaagaaatcaacttctaaagcgaagcagcaggagttgcaaaataaataa
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