Pontibacter korlensis: PKOR_09220
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Entry
PKOR_09220 CDS
T03841
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pko
Pontibacter korlensis
Pathway
pko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKOR_09220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pko03019
]
PKOR_09220
03400 DNA repair and recombination proteins [BR:
pko03400
]
PKOR_09220
Enzymes [BR:
pko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKOR_09220
Messenger RNA biogenesis [BR:
pko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKOR_09220
DNA repair and recombination proteins [BR:
pko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PKOR_09220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKD03274
UniProt:
A0A0E3ZF25
LinkDB
All DBs
Position
2116273..2118453
Genome browser
AA seq
726 aa
AA seq
DB search
MSIQQEVNLKNKLKEVFGYNQFRGNQELIINNIINGRNTFVIMPTGAGKSLCYQLPALSL
PGTAIVISPLIALMKNQVDQLNAFGVNAHFLNSTLSKAETNKVKKETLAGEVKLLYVAPE
SLTKEETVEFLRASNISFVAIDEAHCISEWGHDFRPEYRRIRGIIDQIGNLPIIALTATA
TPKVQLDIQRNLQMDEASVFKSSFNRTNLYYEVRPKHKTKKQLIQYVKKHKGKSGIVYCL
SRKKVEEIAELLRVNDVKALPYHAGLEANVRMANQDAFLNEECDVIVATIAFGMGIDKPD
VRFVIHYDTPKSIEGYYQETGRAGRDGLEGNCLMFYSYDDIVKLEKFNKDKPVTERDNSK
LLLQEMAAYADSAVCRRKQLLHYFGETFEKDCGFCDNCLHPKERYEAQKEVQLALKAVQQ
TGQRFGIDHITHVLTGLRNQYVTSYDHDKLDVFGAGKEQDAQFWSSVLRQVLLSEYLEKD
IDSFGVIKLTQKGEEFINNPVPIQLTKDHNYDQEVKEDEEKEEAQASAGHDEVLFDMLKN
LRKKLAKEKSLPPYVLFQDPSLKEMATVYPTTRDELAHIAGVGMGKVQKFGKPFLDMIAK
YVEENDIVTASDVVVKSTVNKSKIKIYIIQQIDKKVDLEEIAASKDLTMQELIEEIEHIC
YSGTKLNLNYYINNILDDERQEEVYDYFMSSSTDNIAVALKELGTDDYTEEDLRLMRIKF
LSEYAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtctattcaacaagaggtaaatctcaagaacaaattaaaagaagtttttgggtataat
caattcagaggaaatcaggagctgataataaacaatattatcaacggccggaacaccttt
gtgattatgcccacaggcgcgggcaagtcgttgtgttaccaacttcctgctctttcttta
ccgggtacagccatcgttatttcaccgctgatagccctaatgaaaaatcaggtggaccag
ctgaatgcttttggagtgaacgctcacttcttaaattccaccctttctaaagccgaaact
aacaaagtaaagaaggagacgctggctggagaggtgaagctgttatatgtggcgccagag
tctttgacgaaggaggagacggtagagttcttacgagcctctaatatctcctttgtagca
atagacgaggctcactgtatctccgagtggggccacgatttccgtccggagtaccgccgt
atccgtggtatcatcgatcagatcggaaacctgccaatcatagcgcttacagctacggct
acaccaaaggtacagctcgatattcagcgtaacctgcagatggacgaggcttcggtattt
aagtcgtcgtttaaccgcaccaacttatactacgaggtgcgccctaaacacaagacgaag
aagcagctgatccagtatgtgaagaagcacaaaggtaagagcggtattgtgtactgcctg
agccgtaaaaaagtggaagaaattgcggagctgctgcgtgttaacgatgtcaaagccctg
ccgtaccatgccggtctggaagccaatgtgcgcatggccaaccaggatgctttccttaac
gaggagtgcgacgtaattgtggctactatcgcctttggtatgggcatcgacaaaccggat
gtgcgctttgtaatccactacgatacacctaaatccattgaaggttattatcaggagact
ggccgtgccggtcgtgatggactggagggaaattgcctgatgttctacagctacgatgat
atcgttaagctggagaaatttaataaagataagcccgtaacagagcgtgacaactccaag
ttgctgctgcaggagatggctgcttatgccgactctgctgtttgccgccgcaagcagttg
ctgcactattttggagagaccttcgagaaagactgtggcttctgcgataactgtcttcac
ccgaaggagcgttatgaggcgcagaaagaggtgcagctggcactaaaagctgtgcagcaa
actgggcagcgctttggcatagaccacattacacatgtactgacaggccttcgtaatcaa
tatgtaaccagctacgaccatgataagctggacgtatttggagcgggcaaggagcaggat
gcgcaattctggagctctgtgctgcgccaggtcctgctgtcggagtatctggagaaggat
attgatagctttggagtgattaagctgacgcagaaaggtgaggagtttatcaataatcct
gtgcctatacagcttacaaaagaccataactacgatcaggaagtgaaagaggacgaggag
aaagaagaagcacaggcatcggctggtcacgatgaggtgctgttcgatatgctgaaaaac
ctgcgtaagaagctggctaaggagaagagcctgcctccttacgtgctgttccaggaccct
tcgctgaaagagatggctactgtataccctaccacgcgcgatgaattggcgcatattgct
ggtgtgggtatgggtaaggtgcagaagttcggtaagccgttcctggacatgattgccaaa
tatgtagaggaaaatgacattgtaacagcctccgatgtggtggtgaagtctacagttaac
aagtcgaagatcaaaatctacattattcagcagatagacaagaaggttgatctggaggag
atagcggcttcgaaggacctgaccatgcaggagctgatagaagaaatcgagcacatttgc
tactcaggcactaaactgaatctgaactattacatcaataatatactggatgatgagcgc
caggaggaggtgtacgactacttcatgagttcgagcaccgacaacattgctgtagctctt
aaggagctgggcactgacgactacaccgaagaggacctgcgtttgatgcgtatcaagttc
ctgtcggagtatgctaactaa
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