KEGG   Pontibacter korlensis: PKOR_18605
Entry
PKOR_18605        CDS       T03841                                 
Name
(GenBank) DNA-binding protein
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
pko  Pontibacter korlensis
Brite
KEGG Orthology (KO) [BR:pko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pko03009]
    PKOR_18605
   03012 Translation factors [BR:pko03012]
    PKOR_18605
Enzymes [BR:pko01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PKOR_18605
    5.6.2.5  RNA 5'-3' helicase
     PKOR_18605
Ribosome biogenesis [BR:pko03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   PKOR_18605
Translation factors [BR:pko03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    PKOR_18605
SSDB
Motif
Pfam: AAA_11 AAA_12 AAA_30 AAA_19 Viral_helicase1 DEAD AAA_25 ResIII NAT10_TcmA_helicase nSTAND3 UvrD-helicase UvrD_C_2 AAA_22 T2SSE nSTAND_NTPase5 PhoH TsaE AAA_16 SLFN-g3_helicase SMUBP-2_HCS1_1B AAA DAP3 PIF1 AAA_5 AAA_7 RuvB_N AAA_24 NPHP3_N ABC_tran AAA_14 HEM4 Flavi_DEAD ATPase NB-ARC cobW NACHT ParA DUF1033
Other DBs
NCBI-ProteinID: AKD04741
UniProt: A0A0E3UYU1
LinkDB
Position
4320403..4322346
AA seq 647 aa
MSEILYELKQVQELLKIEQEEDRQQYKIKSLKSTIAERKAMGFCWYPVTISKEELGFGNK
VVVELERTRDRDQLHLFQVGKTAALFTNNGERQSLNGVIVGLKRNKVQLATNKEDLPDWI
DDGRLGIDLTFDEMSYREMEIAMKKVIDAYKTRLAELRDILLGDVPARFNDATMSDIPSL
NPSQNEAVRKIVQAKDVAIIHGPPGTGKTTTLVQAILKTLETQKQLLVTAPSNTAVDLLT
EKLANEGVNVIRIGNPSRVSDVLLEHTLDAQIMAHRSYKNLKDFRKTAEEYKRMASQYKR
KFGQEERLQRQFFRAESKRLLDEADRVEEYITEDLLHNVQVITCTLVGAANKAIRHLEYD
TVFIDEAAQALEPACWIPISRAKRVVLAGDHCQLPPTVKSFMAEQKGLGKTLFEKCIERQ
EDVAVMLKTQYRMHHHIMEYSNQQFYKGELMAHESVHSSDLHQYNPHFAPGLAVEFVDTA
GCGYNEVETPESSSSANPDEANLLLNHLAHLLKDYSHADEEVEHLRIGVIAPYRAQINYL
EDRVEHMPLLHELRQLRHLSVGTVDSFQGQERDIIYISMTRSNEQGEIGFLADIRRMNVA
MTRAKKKLVIVGDSATLSQHPFYASFLNYVESIGAYRSAWELQELMA
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgagcgagatattatatgaactgaagcaggtacaggaactgcttaaaatagaacaggaa
gaagaccgccagcaatacaagataaagagcttaaaaagcactattgctgagcgtaaggca
atgggcttttgctggtatccggttaccatttcgaaagaagagttaggcttcggcaacaag
gtggtggtagaactggagcgcacccgcgaccgcgatcagctacacctgtttcaggtaggt
aaaacggctgccctgtttacaaacaatggcgagcgccaaagtttgaatggtgtgattgtg
gggctgaagcgaaataaagtacagctggctacaaataaagaagaccttcctgactggata
gacgatgggcgtcttggcatagacctcacttttgatgagatgagttaccgcgagatggag
atcgcgatgaagaaggtcattgatgcttacaaaacacgtctggcagaacttcgggatata
cttctaggtgatgtgccggcacgtttcaacgatgccaccatgagcgacattccctccctg
aacccgtcgcagaacgaggcagtgcgcaagattgtgcaggctaaggatgtagccatcatt
catggccctccgggaacaggcaaaaccacaacattggtgcaggcaatcctgaagactttg
gaaacacagaagcagcttcttgtaacagctccgtccaacactgctgttgacctgcttacc
gagaaactggccaacgaaggtgttaatgtcattcgcattggcaatccatcacgtgtttcg
gatgtgctgctggagcatacgctggatgcacagataatggcgcacaggtcctataaaaac
ctgaaggacttccgcaaaacggctgaagagtataagcgcatggcgtcgcagtataagcgt
aagttcgggcaggaggagcggctacagcgtcagttcttcagagcagaaagcaagcgcctt
ttggacgaagcagaccgcgtagaagagtacattactgaggacctgctgcacaacgtgcag
gtcattacctgtacactggtaggtgcagcaaataaggctatccggcacctggagtacgat
acagtgttcatagatgaggcagcgcaggccctggaaccagcctgctggattccgatctcc
cgtgctaaacgcgtggtgcttgccggcgatcattgccagcttccgccaaccgtgaaatca
tttatggccgagcagaaagggctaggcaaaacattatttgagaaatgtattgaacgccag
gaggatgtagcagtaatgcttaaaacacagtaccgcatgcaccaccatattatggagtac
tccaaccagcagttttataagggcgagctaatggcgcatgaaagtgtacacagcagtgac
ctgcaccagtacaaccctcattttgcacctggcctggcagtggaatttgtagacacggcc
ggatgtggttataacgaggttgaaactccggagagcagcagctcagctaacccggatgag
gcaaacttattgcttaaccaccttgcgcacctgttaaaggattatagccatgccgatgag
gaagtagagcacctgcgtataggtgtgattgcgccataccgcgcacagatcaactacctg
gaagaccgcgtggagcatatgcccttactacatgagctaaggcaattgcgtcacctctca
gtaggtactgtagatagctttcaggggcaggaacgtgacataatctacatcagcatgaca
cgtagcaatgagcagggtgagattgggttcctggctgacatacgccgcatgaacgtagcc
atgacgcgcgctaagaaaaaacttgtgatcgtgggcgatagtgctacacttagccaacat
cctttctacgcttcgttcctgaattacgtagaaagtataggggcttaccgcagcgcctgg
gaactacaggagcttatggcgtaa

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