Pontibacter korlensis: PKOR_19360
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Entry
PKOR_19360 CDS
T03841
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pko
Pontibacter korlensis
Pathway
pko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKOR_19360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pko03019
]
PKOR_19360
03400 DNA repair and recombination proteins [BR:
pko03400
]
PKOR_19360
Enzymes [BR:
pko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKOR_19360
Messenger RNA biogenesis [BR:
pko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKOR_19360
DNA repair and recombination proteins [BR:
pko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PKOR_19360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6959
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AKD04862
UniProt:
A0A0E3UY62
LinkDB
All DBs
Position
complement(4504901..4507048)
Genome browser
AA seq
715 aa
AA seq
DB search
MENQSMVTIREAREALKLYFGYEQFRPMQEQIIDGVLQGKDVVVLMPTGGGKSVCYQVPA
IVLPGMCVVVSPLIALMKDQVEALLANGIPAAYINSSQTAEQQYRIENQCLEGKLKLLYV
SPEKLLSSGFMAFLRRVKISLFAVDEAHCISSWGHDFRPEYTQLKALKQQFSDIPVIALT
ATADRLTQKDIQEQLYLRNPQVYVASFDRPNINLMVKPGRDRFNRITDFLMRRQNQPGII
YCLSRKATESLADKLKRSGFDATFYHAGMSANQRAKAQEDFLNDDVQIVCATIAFGMGID
KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGAKSDALLFYSYADVMNMRSMLQEGQNEAQT
ELQLVKLERMQQFAEAAACRRRILLQYFGETMEKDCGNCDICRNPPTRFDGTVIAQKALS
AIARTQERANMSLLVDVLRGARNAQVLQAGLDKIKTYGAGREVSTLDWNRYLHQMLNEGL
IEMAYDQGYSLKLTEQSRQVLFDGRKVQLVKFEEVKQEEPAVKARPKRELIKDALFEKLR
TLRKGLADEYGVPPYVIFTDTTLQEMAAERPTNKIAMLAISGVGAQKYERYGDAFITEII
DFINGEQNKGNKIKGATHLATLELLQKGYSVELVAKERSLNPVTVFSHLATLYEQGYDVD
LSRYVSKTEYKAISKAISKLGAEAKLKDLFEALGEQYEYYKIRLSISIFKKEHTW
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcaaagtatggtgactattcgtgaggccagagaagccttaaagttatacttc
gggtatgagcagtttcgccccatgcaggagcaaatcattgatggggtgctgcagggaaaa
gatgtggtggtgctgatgcctacaggaggagggaagtctgtttgctaccaagtgccggct
atcgtactaccgggcatgtgtgtggtggtttccccgctgattgctctgatgaaagaccag
gtagaggcgcttttggcgaatggtatacctgcggcatatatcaatagctcacaaactgcc
gagcagcagtatcgaatagagaatcagtgcctggaaggaaaactgaaactattatacgta
tctcccgagaagcttctttcttctggcttcatggcatttcttcgccgtgtaaaaatctct
ctttttgccgtagatgaagcgcactgtatttcttcctggggacatgatttccgtccggag
tacacgcagttgaaagcactcaagcagcagttctctgacattccggttattgctctaacc
gctactgcggataggcttacacaaaaagatattcaggagcagctttacctgcgaaacccg
caggtgtatgttgcttctttcgatagacctaacatcaacctgatggtgaagccgggtcgt
gaccgattcaacagaatcactgattttctaatgcgccggcagaaccagccagggatcatc
tattgccttagccgtaaagccacagaaagtcttgctgataaactgaagcgaagcggcttt
gatgcgaccttttaccatgcgggcatgtcggccaaccagcgggctaaggcgcaggaagac
tttctgaacgatgatgtgcagattgtttgtgccaccatcgcgtttggaatgggaatcgac
aaatcgaatgtgcgctgggtaattcactacaacctgcctaaaaacattgaagggtattac
caggagataggccgtgccggtagggatggagcgaagtctgatgccttactgttttatagt
tatgctgacgtgatgaacatgcgcagcatgctacaggaaggccagaatgaagcacagacg
gagctccagctggtaaagctggaacggatgcagcagttcgctgaggctgctgcctgtcgg
cgtcgtatactgctacagtactttggagagactatggaaaaggactgtggcaactgtgat
atctgccggaatccgcctacccggttcgatggtactgtcatagcccaaaaagctctctct
gccatagcccgtactcaggaacgcgccaacatgagcttgctggtcgatgtattgcgtggt
gcccgcaatgcacaagtgttgcaggcaggtcttgataagataaaaacatatggtgccggg
cgtgaggtaagcactttggactggaatcgctacctgcaccagatgctgaacgagggcctg
attgaaatggcctatgaccaaggctattccttgaaattgacagaacaaagccgacaggtt
ttgtttgatggccgaaaggtgcagcttgtgaagtttgaggaagtgaagcaggaagagcca
gctgtgaaagctcgtccgaagcgggagctaattaaggatgcacttttcgaaaagctgcgt
acgcttcgtaaaggtttggctgatgagtatggagtgccgccttatgttatttttactgat
accactttgcaggaaatggctgctgagcgacctacaaataaaattgctatgttggctata
tcaggtgtaggcgcacagaagtatgaacgatatggcgatgccttcattaccgaaattatc
gatttcattaatggggaacagaataaggggaacaagattaaaggagcaacgcacctggca
acattggagctattacagaaagggtatagtgtagaacttgttgccaaagagcgtagtctc
aatcctgtaaccgtcttctcccacctggccactctatatgagcagggctatgatgtagac
ctgtcgagatacgttagtaaaacagaatacaaggctatatccaaagctatctctaaacta
ggggctgaagctaaattaaaagacttgtttgaagctcttggagagcagtacgaatattac
aagatcaggctgtccatctctatcttcaagaaagagcatacctggtaa
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