Pontibacter korlensis: PKOR_20620
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Entry
PKOR_20620 CDS
T03841
Name
(GenBank) RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pko
Pontibacter korlensis
Brite
KEGG Orthology (KO) [BR:
pko00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pko03016
]
PKOR_20620
Enzymes [BR:
pko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PKOR_20620
Transfer RNA biogenesis [BR:
pko03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PKOR_20620
Prokaryotic type
tRNA splicing ligases
PKOR_20620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
At5g52880_ARM
Motif
Other DBs
NCBI-ProteinID:
AKD05034
UniProt:
A0A0E3ZGL8
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All DBs
Position
4804813..4806249
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AA seq
478 aa
AA seq
DB search
MKKKKKKASTKLSSQDLLALGFPSGKPLGTALNIIHTHYTELGKNHQIELLQDVLAAPDQ
YHMHATLAPLAQAILAQQEAEPIALKPDKQQYAIYGAEGIEEGALNQMDIAMRLPITDSG
ALMPDAHQGYGLPVGGVLATHHAVIPYGVGVDIGCRMSMSIFDIHTGYLDKNREKIIKML
KDNTRFGNTAFKRPMDHEIMERPEFSEIPIVRELKDRAFQQLGTSGGGNHFVEFGTVEIH
DANNDFDLPSGKYVAILSHSGSRRLGANIAGYYTKVAMDYCPLPQEAKHLAWLDLDTEAG
QEYWLAMNLAGDYASACHHQIHERLAASLGEAPMARIENHHNFAWKEKDASGKEVIVHRK
GATPAGKGVMGIIPGTMATPGFIVRGKGEAAAINSASHGAGRVMSRTQAFKTLSEAQMRK
NLQKAGVDLVGAALDEAPMAYKDIHQVMAYQRDLVEVVGTFYPKIVRMNEDKKYVEVD
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaaaagaaaaaagcatcgaccaagcttagctctcaggatctactggccctg
ggctttccttcgggcaagccgcttggcacagcgcttaacattatacatacacactataca
gagctgggcaaaaaccaccagatagagctgctccaggatgttttagctgcgcctgaccaa
taccacatgcatgctacactggctcccctggcgcaggctatacttgctcagcaggaggct
gaacccattgcgctgaagcctgacaagcagcagtatgccatttatggagcagaaggcata
gaagaaggagccttgaaccagatggatatagccatgcgcctacctataactgacagtggc
gccctgatgccagatgcgcaccaaggatatggcttacctgttggaggagtattggctaca
caccatgcagttataccctatggcgtaggtgttgatattggctgccgcatgagcatgagt
atctttgatattcataccggctacctagacaagaaccgggagaagatcatcaagatgctg
aaggataacacccgcttcggcaacactgccttcaagcgtccaatggatcatgagataatg
gagaggcctgagttctccgagattcctattgtgcgtgaattgaaagacagggcttttcag
cagctgggcacctccggtggtggtaaccacttcgtggagtttggcacggtagagatacat
gatgctaataatgattttgacctgccatcaggcaaatacgtggctattctctcccactcc
ggctcccgaaggcttggcgctaacattgccgggtactacacaaaagtggccatggattac
tgtccgctgccccaggaggcaaaacacctggcctggcttgatttagatacagaagctggc
caggagtactggttagccatgaacctggcgggagactatgcctccgcctgccaccatcag
atacatgagcgcctggcggcaagtttaggagaagcacctatggccagaatagagaaccac
cacaactttgcctggaaggagaaagatgcctctggcaaagaagtgatcgtgcacaggaaa
ggtgctaccccggcgggaaaaggcgtgatgggtatcataccgggcactatggctactcca
ggttttatagtgcgtggcaaaggagaggctgctgccatcaattcagcttctcatggagcg
ggtcgggtgatgtccagaacacaggcttttaaaacactatcggaagcgcaaatgcgaaag
aacctgcaaaaagctggcgtggacttagtaggtgcagctctggacgaagcaccgatggct
tataaagacatacaccaggtaatggcataccaacgagacctggtagaagtagtaggcact
ttttaccccaaaatagtgcggatgaacgaggataaaaagtatgtggaggtagattaa
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