Paenibacillus konkukensis: SK3146_01088
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Entry
SK3146_01088 CDS
T09860
Symbol
hup_1
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pkp
Paenibacillus konkukensis
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkp03032
]
SK3146_01088 (hup_1)
03036 Chromosome and associated proteins [BR:
pkp03036
]
SK3146_01088 (hup_1)
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_01088 (hup_1)
DNA replication proteins [BR:
pkp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SK3146_01088 (hup_1)
Chromosome and associated proteins [BR:
pkp03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SK3146_01088 (hup_1)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SK3146_01088 (hup_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
Peptidase_C80
HU-CCDC81_euk_1
HU-DNA_bdg
Glycos_trans_3N
Motif
Other DBs
NCBI-ProteinID:
UQZ81931
UniProt:
A0ABY4RHN3
LinkDB
All DBs
Position
complement(1254924..1255196)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELINKVAETSELSKKDATKAVEAVFEAISEALQSGDKVQLVGFGNFEVRERSARKG
RNPQTGEEIEIPSSKIPAFKPGKALRDGIQ
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatctgaattgattaacaaggtggcagaaaccagcgagctttccaagaaggat
gctactaaagcggttgaggctgtttttgaagcgatctccgaagctctgcaaagcggggat
aaagtgcaactggtaggattcggaaatttcgaagttcgtgaacgttccgctcgtaaagga
cgcaatccgcaaacgggtgaagaaatcgaaattccatccagcaaaatcccggctttcaaa
ccgggtaaagctctgagagacggaatccaataa
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