Paenibacillus konkukensis: SK3146_03394
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Entry
SK3146_03394 CDS
T09860
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pkp
Paenibacillus konkukensis
Pathway
pkp03420
Nucleotide excision repair
pkp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SK3146_03394 (yjcD)
03430 Mismatch repair
SK3146_03394 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_03394 (yjcD)
Enzymes [BR:
pkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SK3146_03394 (yjcD)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SK3146_03394 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
SK3146_03394 (yjcD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
AAA_30
AAA_12
Mlf1IP
Motif
Other DBs
NCBI-ProteinID:
UQZ84161
UniProt:
A0ABY4RQU7
LinkDB
All DBs
Position
3935671..3938085
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AA seq
804 aa
AA seq
DB search
MIKGDNMTNPTSYNVPYGASIKRIPQAAIAPAKTSKDLVSDHESDAFYFRSLENSGIALN
ARQIEAVRHDQGPLLTLAGAGSGKTSVLVARAGYLMNVLGVHPSHILLVTFSSKAAAEMK
QRIAALPGITSGMAREVQARTFHSFFLLLLRRQGYTQDIFSETRYQHIVLKRILRERGLQ
DDYEPETLLSVLSSCKMNMTDLNGLPERSMDERNIKRILRQYEQWKADQRKMDFDDILVF
AHKLLLSEPSLLASLQQRFRYVMNDEFQDTNKLQYELVRMIAEPQNNLMVVGDDDQTIYT
FQGASHEFILQFHRQYPKARTVTLDINYRSTSSIVGLGNEIIRHNMRRKQKTLQATKESP
AAPRYYRPGDTDDEAATVLAEIRSEVEQGRRSYSDYAVLYRTASSSRAMLEELVIQNIPF
VHDGNTDLFYEQWIVKPIIDHLRLAMDRRSFAAIEGILQTLYVSREKGMEFIYAQEKLRP
KKGPLVHLLSLPDLKEFQKEKVKERIELVSMIRDMKPADAIRHMRRSFYDVFMETADGRS
FTQHKEMLKETLDELESSAKRFDSIEAFLGHIGHMLQMHQAMEQLRSDPNADTVSLMTIH
KAKGLEFPVVFVIGFSEGILPHSSALDAGEDSSAKGDKRPKTVVQADNGQKDAYAALEEE
RRLAYVAVTRAKEELIVCSPAYYRGKKANVSRFLTAVFSAPKPAAAANTAAPRAQAGPGP
AAAAAKPGGAGYRSAPGSGTGGIGGSATASGAPKKLHTVPAWLCTSGSCPAWARISSAQE
SKRASKACPLCQAPMRRGSKEVPV
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaggtgataacatgactaaccctacatcttataacgtcccttacggcgcttcg
ataaaacggattccgcaggccgctattgcgcccgcgaaaacaagcaaggacctggtgtcc
gatcatgaatcggatgccttttattttcgttcgctggagaattccggcatcgccttgaac
gcccggcagatcgaagcggtgcgccacgatcaaggcccgctactgacgctggccggcgcc
ggttccggcaaaacgtcggtgcttgtcgcccgcgcaggctatctgatgaacgttctcggc
gtccatccttcgcatattttgctcgttaccttctccagcaaagccgccgcggaaatgaag
cagcgtatcgccgctcttcccggcataacaagcggaatggcccgcgaagtgcaggcgcgg
acgtttcattccttcttcctgctgctgctccgaaggcaaggatatacgcaggacattttc
agcgaaacccgctatcagcacatcgttctgaaacgaattctgcgcgagcgcggactccag
gacgattacgagccggagacgctgctatccgtcctctcttcgtgcaaaatgaacatgacc
gatctaaacgggctgcccgagcgttccatggacgagaggaacatcaaacgcattttgcgg
caatacgagcagtggaaagcggatcagcgcaaaatggatttcgacgatattctcgtcttc
gcccacaagctgctgctcagcgagccttcgctgctggcttctttgcagcaacggttccgt
tacgtcatgaacgacgagtttcaggacacgaacaagctgcagtacgagcttgtccgcatg
atcgccgagccgcagaacaatctgatggtcgtaggagacgacgatcagaccatctatacg
tttcagggcgccagccacgaattcatcctgcagtttcaccggcaatacccgaaggcccga
acggtcacgctggatatcaactaccgttccacttccagcatcgtcgggctaggcaatgaa
atcatacggcataatatgcgccgtaagcaaaagacgctgcaagcgaccaaggaaagcccc
gcagcgccccggtattacaggcccggcgatacggacgacgaagccgcaacggtccttgcc
gaaatccgcagcgaggtggagcaaggccggcgttcctacagcgactacgcggtactgtac
cgcacggcaagcagcagccgggccatgctggaggaactggtcattcagaacataccgttc
gtgcatgacggcaataccgatctgttctacgagcagtggatcgtcaagccgatcatcgac
catctgcggcttgccatggaccgtcgcagctttgcagcgattgaagggattttgcagact
ttatacgtgagccgggagaaagggatggaatttatttacgctcaggagaagctgcggccg
aagaaagggccgctcgtgcatctcctatccttgccggacttgaaggaatttcagaaggag
aaggtaaaggagcgcatcgagcttgtcagcatgatccgcgatatgaagccggccgacgcg
attcgccatatgcgccgcagcttctacgacgtcttcatggaaacggcggacgggcgcagc
ttcacgcagcataaggaaatgctgaaggaaacgctcgacgagctggaatcgtcggccaag
cgcttcgactcgatcgaagcgttcctcggccatatcggacatatgcttcagatgcaccag
gccatggagcagctgcgcagcgatccgaacgccgatacggtgagtttgatgaccattcac
aaagcgaagggcctggaatttcccgtcgtcttcgtcatcggcttttccgaaggcatactg
cctcacagctctgcgctcgacgccggagaagactcctccgccaaaggggataagcgcccg
aagaccgtcgttcaagcggacaacggccagaaggacgcctacgccgcgcttgaggaagag
cggcggctcgcttatgtagccgttacacgggcgaaggaggagctgatcgtctgttcgccg
gcttactatcgcggcaagaaagcgaacgtctcgcgctttcttaccgccgtgttcagcgcg
cccaagcctgctgccgcggcgaacacggccgccccgcgggcacaggcgggccccggcccg
gccgctgcggctgccaagcccggcggcgcgggctaccgctcggcgcccggcagcggcacc
ggcggcatcgggggaagcgccacggcaagcggcgcgcccaagaagctgcacaccgtgccg
gcgtggctctgcacgagcggcagctgccccgcatgggcgcggatcagcagcgcccaagag
agcaagcgggcgagcaaggcgtgcccgctgtgccaggccccgatgcgccgcggcagcaag
gaagtgccggtgtaa
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