Paenibacillus konkukensis: SK3146_04120
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Entry
SK3146_04120 CDS
T09860
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
pkp
Paenibacillus konkukensis
Pathway
pkp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SK3146_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkp03021
]
SK3146_04120
03019 Messenger RNA biogenesis [BR:
pkp03019
]
SK3146_04120
Transcription machinery [BR:
pkp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SK3146_04120
Messenger RNA biogenesis [BR:
pkp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SK3146_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
AAA
S1CSD-TOTE-2
AAA_22
NACHT
Rap1_C_Sp
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UQZ84865
UniProt:
A0ABY4RSD4
LinkDB
All DBs
Position
4756745..4758055
Genome browser
AA seq
436 aa
AA seq
DB search
MDMHLAQLEALKLTELYQLAKKHQIPYYGQLKKKELIFAILRAQAEKGGLMFMEGVLEIL
QDGFGFLRPINYLPSSEDIYISASQIRKFDLRSGDLVSGKCRPPKENERYFGLLHVEAVN
GEDPVTAAERLHFPALTPLYPQKKIVLETSPTHYSTRLMDLLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNYPDIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLERAQRLVEHKKDVVILLDSITRLARAYNLVVPPTGRTLSGGIDPGAFHRPKRFFGA
ARNIEEGGSLTILATALIETGSRMDDVIYEEFKGTGNLELHLDRKLAERRIFPAIDIRRS
GTRREEMLLTKEELDKVWAIRKGMNDSHEYLEAFLKKLADSKTNQEFLDMLEKTGGNGSS
SSSSSPSSKRVKNSAS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcatctagcgcaactagaggcactgaaattaacggagctttaccaattggcg
aagaagcatcaaattccttattacggccaattgaagaagaaagaacttatttttgccatc
ttaagagcacaggcggaaaaaggcgggcttatgtttatggagggcgtcctggaaattctt
caggatggcttcggcttcttaagaccgatcaactacttgccgagctcggaggatatttac
atctccgcgtcgcaaatacgcaaattcgatttgcggtccggcgatctggtatccggcaaa
tgccgtccgcctaaagagaacgaacgatatttcggactgcttcacgtcgaagcggtcaat
ggtgaagaccctgttacagctgcggaacgactgcactttccagctttgactcctctttat
ccgcaaaagaaaatcgtcttggaaacatcccctacgcattattccactcgtcttatggat
ttattggctcccgtaggattggggcagcgcggtttgatcgtagctcccccgaaagcaggc
aaaacgttattgcttaaggaaatcgccaacagcatctctacgaactacccggatatcgag
ctgttcgtgctgctgattgacgaacgtccggaggaagtgacggatatgcagcgttccgtc
aaaggcgaggtcgtcgcttctacgttcgacgagcttcccgagaatcatattaaggtggcg
gagctggtgctggagcgcgctcagcgtcttgtcgagcataagaaggacgttgtcattttg
ctcgatagcattacgcggctcgcccgcgcatacaaccttgtcgtgccgccgacgggacgc
acattgtccggggggatcgatccgggggcgtttcaccggcccaagcggtttttcggcgca
gcccgcaacatcgaggaaggcggcagcttgaccattttggcgactgcgctgatcgaaacg
ggatcgcgcatggacgatgtcatttatgaggaatttaaaggtacgggcaatttggagctg
catttggaccggaaattggccgaacgcagaattttcccggcgatcgatatacgccgttcg
ggtacgcgtcgcgaagagatgctcctgaccaaagaagagctggataaagtatgggcgatc
cgcaaaggcatgaacgattcccacgagtacttggaagcgttcctgaagaagctcgccgat
tccaaaaccaatcaagagtttctggacatgttggaaaaaacaggcggcaacggttcctct
tcgtcctcctcatcgccttcttccaaaagagtgaagaactccgcgtcgtaa
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