Paenibacillus konkukensis: SK3146_04241
Help
Entry
SK3146_04241 CDS
T09860
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pkp
Paenibacillus konkukensis
Pathway
pkp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SK3146_04241 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkp03021
]
SK3146_04241 (rpoC)
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_04241 (rpoC)
Enzymes [BR:
pkp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SK3146_04241 (rpoC)
Transcription machinery [BR:
pkp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SK3146_04241 (rpoC)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SK3146_04241 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UQZ84973
LinkDB
All DBs
Position
4876490..4880110
Genome browser
AA seq
1206 aa
AA seq
DB search
MDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWECH
CGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDMS
PRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAVKKLLQD
IDIDKEVETLKEELKTAQGQRRNRAIKRLEVMEAFRNSKNMPEWMVLDVLPVIPPELRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGRR
GRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKEM
ALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHRL
GIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARVLMLASGNILN
PKDGKPVVTPSQDMVLGSFYLTTDNKFAKGALTIVRSVHEAVSLYQRGAASLHARIAIPA
KVLSKTSFTPQQQEAMLITTIGKVIFNEIYPADFPYINEPTKSNLLVGPSDAYFVFDKGA
NLRKIMEELPECKAVGKEYLGSIIAECFRRYHTTLTSVILDRIKELGFTYSTKAGITIAV
ADVTVPPEKDELLKESEDKVNVVTNQYRRGLITDDERYDRVIAIWSKTKDEITDILMKSL
DKYNSINMMVESKARGNKSQITQLGGMRGLMATPTGRIYELPIKSNFREGLTVLEYFIST
HGARKGLADTALRTADSGYLTRRLVDVAQDVIVRDEDCGTDKGFTVSRIQDGKEVIEDLY
DRIEGRYAFETIRDPQTGEVIVGRNELIEAGIADKIIAAGIEKLQIRSVLSCRSRHGVCK
KCYGRNLATGQHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAIITEIDGIVKDIREAKDRREIEVLGEAESKVYAVPYGSRIRVSVNQHVEAG
DELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMVRQMLRKIRIV
DAGDTTLLPGSFVDIHEYEEANKVALFADLEPAVARPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMSRYRNIRITNPNEEVTDEDQSLEM
ETVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggacgttaacaacttcgaatttatgaaaatcggcttggcttctccggaaaagatccgt
tcgtggtcccgcggggaagttaaaaaaccggaaacgatcaactacagaacactgaagcct
gaaaaggaaggtttgttctgcgaaaaaatattcggaccgaccaaagactgggaatgtcat
tgcggaaaatacaaacgcgttcgttataaaggcgtcgtttgcgaccgctgtggcgttgaa
gtgaccagacaaaaggttcggcgtgagcgtatgggtcacatcgagctggcggctccggta
tcccacatttggtacttcaaagggattccgagccgtatgggcttggctctcgatatgtct
cctcgttccctcgaagagatcatctacttcgcatcttatgttgtaacggacccaggcgat
acaccgctggagaaaaagcagctgctgtccgagaaagaataccgcagctaccgtgaaaag
tacggctatgctttccaagcgggaatgggcgccgaagcggtgaaaaagcttcttcaggac
atcgacatcgataaagaggtcgaaacgctgaaagaagagctcaaaacggctcaaggccag
cgccgtaaccgtgcgattaaacggctcgaagttatggaagcattccgcaattcgaaaaac
atgccggaatggatggtactcgacgtgcttccggttattcctccggagctgcgcccgatg
gttcagctcgacggcggacgctttgcgacttccgacttgaacgatttgtaccgccgcgtt
attaaccggaacaaccgtctgaaacggctgctcgatcttggagctccggatattatcgtt
cagaacgagaagcggatgctgcaggaagcggtagacgccttgatcgacaacggccgccgc
ggccgtcctgtaaccggtcctggcaaccgtccgctcaaatccttgagccatatgctcaaa
gggaagcaaggacgcttccggcaaaacttgctcggtaaacgggttgactattccggtcgt
tccgttatcgtcgtaggtccgagcctcaaaatgtaccaatgcggtcttcctaaggaaatg
gctttggaactgttcaaaccattcgttatgaaggagcttgtcaataaaggcctcgcccat
aacatcaagagcgcgaagcgcaaagtagaacgcgtaagccctgaagtatgggatgtgctt
gaagaagtcatcaaggaacatccggttctgctcaaccgtgcccccacgctgcacagattg
gggattcaggcgttcgaaccgatccttgtagaaggacgcgccatcaagctgcatccgctc
gtatgtacggcgtataacgccgactttgacggtgaccaaatggccgttcacgttccgttg
tcttccgaggctcaagcggaagcgcgcgtgcttatgctcgcatccggtaacatcttgaac
ccgaaagacggcaagccggtcgttacgccttctcaggatatggtcttgggaagcttctac
ttgacgaccgacaacaaattcgccaaaggcgcgctgacgatcgtacgttcggtgcatgag
gctgtttccttgtaccagcgcggcgccgcttcgctgcatgctcgtatcgccatcccggcg
aaagtgcttagcaaaacgagcttcacgccgcagcagcaagaagctatgctgatcactacg
atcggtaaagtcatctttaacgaaatttatcctgctgatttcccttatatcaacgagccg
acaaagtcgaacttgctcgtgggcccttcggatgcatatttcgtattcgacaagggggcg
aacctccgcaaaattatggaggagctgccggaatgcaaagcggtaggtaaagaatatctc
ggatcgatcatcgcggaatgcttccgcagataccatacgacgttgacttcggtcattctc
gaccggatcaaggagcttggctttacttattccacgaaggccggtattacgatcgccgta
gcggacgttaccgttcctccggaaaaggatgagctgctgaaagaatccgaagataaagtt
aacgtagttacaaatcaataccgccgcggcttgattaccgacgacgaacgttatgaccgc
gttattgccatctggagtaaaacgaaagatgaaattacggacattctgatgaagtcgctc
gataaatacaattccatcaacatgatggttgagtctaaagcacggggtaataaatcgcag
attacgcagctcggcggtatgcgcggtctgatggctacgccaaccggacgtatttatgag
ctgccgatcaaatcgaacttccgcgaaggcctcaccgtattggagtactttatctccacg
cacggcgcccgtaaagggttggccgatacggcgctgcggacagcggactcgggttacttg
acccgtcgtctggtcgacgtggcacaggacgttatcgttcgcgacgaagattgcggtacg
gacaaaggctttaccgtcagccgtattcaggacggcaaagaggttatcgaggatctgtac
gaccgtatcgaaggccgctacgctttcgaaacgatccgcgacccgcaaaccggcgaagta
attgtcggacgcaacgagctgatcgaagccggcatcgccgacaagattatcgctgcgggc
attgagaagctgcaaatccgctccgtgcttagctgccgctccagacacggcgtctgcaaa
aaatgctacggccgtaacctggcgacaggtcagcacgtagagatcggggaagctgtaggg
attatcgccgctcagtccatcggggaaccgggaactcagctcaccatgcgtacgttccat
accgggggcgttgcaggggacgatattacccaaggtttgccgcggattcaggagctcttc
gaggcccggaatccgaaagggcaagcgatcattacggaaatcgacggtatcgtcaaagat
atccgcgaagcgaaagaccgccgcgagatcgaagtgctcggcgaagcggaatccaaagtt
tatgcggtgccttacggctcccgtattcgcgtgtcggtgaaccagcacgtcgaagccggc
gacgaattgacggaaggctccatcgaccctaaagaaatgctgcgcatcaaagggattcgc
ggtgtgcaaaactatattctccaagaggttcagcgcgtataccgtaaccagggcgttgaa
atcaacgataagcatatcgaagttatggttcgccagatgcttcgcaaaatccgtatcgtt
gacgccggcgacacgacgttgctgccaggctccttcgtcgatattcatgagtacgaggaa
gccaacaaagtggcattgttcgccgatctggagccggctgtcgcaagacctgtgctgctc
ggtattaccaaagcgtcgctcgagaccgattccttcctgtcggccgcgtccttccaggaa
acgactcgcgtattgacggacgctgcgatcaagggcaaggtcgaccagctgctcggcttg
aaagagaatgttattatcggtaagctgatccctgcaggtacggggatgtcgagataccgt
aacattcgtattaccaatcctaacgaagaggttacggacgaagatcagtctctcgaaatg
gagacggtcacggtagaataa
DBGET
integrated database retrieval system
