Paenibacillus konkukensis: SK3146_06276
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Entry
SK3146_06276 CDS
T09860
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pkp
Paenibacillus konkukensis
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_06276 (addB)
Enzymes [BR:
pkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SK3146_06276 (addB)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SK3146_06276 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UQZ86983
LinkDB
All DBs
Position
7217255..7220971
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AA seq
1238 aa
AA seq
DB search
MAIRFVLGRAGSGKSEYCLRSVKDRLIESPSGRPLILLVPEQATFQAEYALASAPELGGT
LRAQVLSFRRLAWRVMQEVGGTARLPIDDTGKKLLIYKILHKHRDSLKLFSATAEQMGFI
EKVSDLFKEFKRYCITTDGLSAFMDSSAVKEQPASMLDKLHDLRLIYGEFEQELSKAYLD
GEDYLTLLAAQLPQSEYIRGAECWIDGFHGFTPQEFAVIEQLASSCREVALTLCLDREYR
LGEKPHELDLFHPTARTMLQLLERLEALHVPIRETLILGSSPPARFAASPMLAYMEGAFE
QRVKRPYPGMTGANAASAIDGVRLTAAVNRRAEVEGAAREMIRLVREEGLRFRDMTVTVR
NVEAYGELIAETFTDYGIPHFFDNKRTMMHHPLVELIRSSMEVILHYWKYDAVFRCVKTD
FFLPLQHDEKAEENAPDRHAMDQLENYVLAFGIRGAKWFDGKPWTYSMRSSLEQPEGAGT
DSEAAFLRKMNACRKRIADPLHAFQERMKRAKTIAEKVKALYGLLTELQVPERLESWSQK
AVREGKPEKAREHSQVWDRIIDMLDQLVELLGDETASAETFAGLLETGMESIKLGLVPPS
LDQVLVGSMDRTRTGRMKHVFVLGVNEGVIPAKMKEDSVLSEPERENLTALGLPMAEGSR
RKLLDEQFLIYCAFCTPSHCLWLSYPLADEEGKSLLASDVIRHMKRMFPSVKERLVMAEP
ASSMTMTEQLDYVSHPHKAMSYLIVQLKQWMKGEPMSPVWWSVYNWFVRQPGWSARLRLM
LQALLYTNEAKGLRPLTSKLLYGDHVLTSVSRMERYVACPFSQFASHGLRLQERRIFRLE
APDIGQLFHAALSLFAEQVTKDGNEWGKLTAEDCLVTAGSVVDTLAPRLQSEILLSSRRY
HYIARKLKQVIGRTALMLGQHAKFGQFEPIGLEIGFGAGQPIPPLSYELENGIRMDVRGR
IDRVDRADTDQGTLLRVIDYKSSPTALQLAEVYYGLSLQMLTYLDVIMTHAKTWLGTEAK
PAGVLYFHVHNPLLQTKNRISAEKADDELRKKFKTRGLVRADAETARMMDSTLSGASGHS
QLIPVALKNDGSFYKSSSVADDAEWKLLRDYVRQTMKGIGEAMTGGDVAIQPYRMGAETA
CAHCSFKPVCQFDTQFEANGYRVLQPMGKERAMEMMKERVEAEPAPRIVPFRPARAGAKK
AKAAAAEASGEKTLDMEQLEWFENLDMTGGEPDDEQDT
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcaatccggtttgtgctgggaagagccggcagcggaaaaagcgaatactgtttgcgc
agcgtcaaagacaggctaatcgagtcgccgagcgggcggccgctcattttgctggtgccg
gagcaggctacctttcaagcggagtatgcgttggcatccgctccggagctcggaggaacg
ctgcgcgctcaagtgctcagcttccgcaggctggcgtggcgggtcatgcaggaagtggga
ggcacggcgcggctgccgatcgacgatacggggaaaaagctgctcatttataaaatttta
cataaacatcgcgacagcctgaagctgttctccgcgacggcggagcagatggggttcatt
gaaaaggtaagcgatttgttcaaggagtttaagcggtattgcatcacgacggacggcttg
tcggcgtttatggacagctcggccgtgaaggaacagcccgcatcgatgctggacaagctc
catgatttacggctgatttacggggaattcgagcaggagctgtccaaagcttatttggac
ggagaggattatttgacgctgctcgccgcgcagcttccgcagtccgagtatatccgcggg
gccgaatgctggatcgacggcttccacggcttcacgccgcaggagtttgccgtcattgag
cagctcgcctccagctgccgggaagtcgccttgacgctttgtctcgaccgggagtaccgg
cttggggaaaagccgcatgagctggatttgtttcatcctacggcgagaacgatgcttcaa
ctgctggaacggctggaggcgctgcatgtgccgatccgcgagacgctgattctcgggagc
tctccgccggcgcgatttgcggcaagcccgatgctggcctatatggaaggcgccttcgag
cagcgggtcaaacggccttatccggggatgacgggggcgaatgcggcttccgcaatcgat
ggcgtacgcctgacggcggccgtcaaccggagggcggaggtagagggagcggcccgcgag
atgatccgtctcgtccgcgaggaagggttgcgctttcgggacatgacggtcacggtgcgc
aacgtcgaggcatacggcgagctgattgcagagacgttcacggactacggcatcccccac
ttctttgacaataagaggacgatgatgcatcatccgctggttgaacttatccgctcgtcg
atggaagtcatcctgcattattggaaatacgacgccgtattccgctgtgtgaagacggat
ttttttctcccgctgcagcatgatgagaaggcggaggagaatgcgccggaccgtcatgcg
atggatcagctggaaaactatgttctcgccttcggcattcgcggggcgaaatggttcgac
gggaagccgtggacgtattctatgcgctcgagcctggagcagcccgagggggcgggaacc
gattcggaagcggccttcctgcgtaaaatgaacgcctgccggaaaagaatcgccgatccg
ctccacgcgtttcaggaacggatgaagcgggcgaagacgatagccgagaaggttaaagcg
ttgtacggtctcctgacggagctgcaggtacctgaacggctggagagctggagccagaag
gccgtgcgcgaaggcaagccggagaaagcgcgcgagcattcgcaggtatgggaccgcatc
atcgacatgctggatcagctggtcgagcttctgggagacgagacggcgtcggcggaaacg
ttcgcaggcttgctcgaaaccgggatggagagcattaagctggggctggtgccgccgtct
ctggatcaggtattggtcggaagcatggaccggacgagaacgggccgtatgaagcatgta
tttgtgctcggcgtcaacgagggcgtcatcccggccaaaatgaaagaagacagcgtgctg
agcgaaccggagcgggagaacttgaccgcgctcggattgccgatggcggaaggaagccgc
aggaagctgcttgacgagcagtttctcatctattgcgctttctgcacgccttcgcactgc
ctgtggctcagttatccgctggccgacgaggaaggaaagtcgctgctggcttccgatgtc
atccggcatatgaagcgaatgttcccgtcggtcaaggagcggctcgttatggccgagccg
gcttcatccatgacgatgacggagcagctcgattatgtgtcgcatccgcacaaggcgatg
tcctacctgatagtgcagctgaagcaatggatgaaaggcgagccgatgtcgccggtatgg
tggtcggtttacaactggttcgtccggcagccgggctggagcgcccgattgcggcttatg
ctgcaggcgcttctgtatacgaacgaagcgaaggggctgcgcccgctgacaagcaagctg
ctgtacggggatcatgtgttgacgagcgtgtcgcggatggagcgctatgtagcctgtccg
ttctcgcagttcgcttctcacgggcttcgtctgcaggaacgccgaatattccggctggag
gcgcccgatatcgggcaactgttccatgcggcgctgagcttgttcgccgagcaggtgacc
aaggacgggaacgaatggggcaagctgacggccgaagattgtctggtcacggcgggcagc
gtcgtcgacacgctcgccccgaggctgcagagcgaaattctgctcagctcccgccgttat
cattatattgcgcgcaagctgaagcaggtgatcggtcgtacggcgctcatgctgggccag
cacgccaaattcgggcagttcgagccgatcgggctggagatcgggttcggggcgggacag
ccgattcctccgttatcttatgagctggagaacggcattcggatggatgtgcgcggacgg
atagaccgggtcgatcgggctgacaccgatcagggaacgctgctgcgagtcatcgattac
aaatcgagtccgacggcgcttcaattggccgaggtgtactacggcttatcgctgcagatg
ctgacttatctcgacgtcattatgactcatgccaagacgtggctgggtacggaagcgaag
cccgcgggagtgctgtatttccatgtacataatccgctgctgcagacgaaaaaccggatt
tcggcggagaaagcggacgatgagctgcgcaaaaaattcaagacgagagggcttgtccgg
gcggatgcggaaacggcgcgaatgatggacagcacgttaagcggagcgagcggccattcg
cagcttattccggtggcgctcaaaaacgacggcagcttctataaatcttcgtcggtcgcc
gacgatgccgagtggaagctgctgcgggattatgtacggcaaacgatgaaaggtatcgga
gaggcgatgacgggcggagacgtcgcgatacagccgtaccggatgggcgccgagacggct
tgcgcccactgctcgtttaagcctgtatgtcaattcgatacgcaattcgaagcgaacggc
tatagggtgctgcagcctatgggcaaggagcgcgctatggagatgatgaaagaacgggtg
gaggcggagcctgctccgcgtatcgtgccgttccggccggcccgagcgggcgccaaaaaa
gcgaaagccgctgcggcggaagcaagcggggagaagacgctggatatggagcaattggaa
tggttcgaaaatctggatatgacgggaggcgagccggatgatgaacaggatacctaa
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