Paenibacillus konkukensis: SK3146_06621
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Entry
SK3146_06621 CDS
T09860
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pkp
Paenibacillus konkukensis
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkp03032
]
SK3146_06621 (topA)
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_06621 (topA)
Enzymes [BR:
pkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SK3146_06621 (topA)
DNA replication proteins [BR:
pkp03032
]
Prokaryotic type
DNA Topoisomerases
SK3146_06621 (topA)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SK3146_06621 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Zn_ribbon_3
Toprim_2
DUF2387
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UQZ87324
LinkDB
All DBs
Position
7576572..7578656
Genome browser
AA seq
694 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKFIVKASMGHIRDLPKSQIGVEIQKNFEPKYITIRGK
GSVLKELKDARKKVKKVYLAADPDREGEAIAWHLAHYLELEETDACRVVFNEITKQAVKD
AFKTPRKINLDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLVYDREN
EIKAFVPEEYWTITAKLQAGSSEFEAKFHSLKGEKKELSNQQEVNEILAGLEKAEFVVGE
VREKERLRNPSPPFITSSLQQEAARKLNFRASKTMSVAQQLYEGIDLGSEGTVGLITYMR
TDSTRISPVAQEEAQQFIVQKYGEAYYPETPRVYIKKAANAQDAHEAIRPSSVLREPEHI
KEHLSRDQFRLYKLVWERFVASQMASAVLDTMTVDIAAGDTVFRAVGSKMKFPGFMKVYV
EGNDDGTTEEDKLLPPLKHGDKVKRKQIDPKQHFTQPPPRYTEARLVRALEEMGIGRPST
YAPTLETIQKRGYVAIEEKKFIPTELGELVIQQMIEFFPEILDVEFTAHMEEELDHVEEG
KEDWVKVLNSFYVSFEKRLEVAEEEMEKIEIQDEVSDEICEKCGRHLVYKMGRFGKFLAC
SGFPDCRNTKPIVKDIGVTCPSCKEGKIIERRSKKGRVFYGCDRYPECEFVSWDKPVGQP
CPKCGSMLIEKRNKNGVFHQCIQCDFKDEVQEKE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcgttagtcattgtggagtcacccgcaaaagccaaaaccatcggcaaatat
ttgggcagtaaatttatcgtcaaggcatccatgggccatattcgcgatcttccgaaaagc
caaatcggtgttgagatacagaaaaattttgaaccgaagtatattacgatacgcggcaaa
ggctctgttctcaaggaactgaaagacgcccgcaaaaaagtaaaaaaagtgtatctggcg
gctgaccctgatcgcgaaggggaagctatcgcctggcatttggctcattatcttgagctg
gaagaaaccgacgcctgtcgcgtcgttttcaatgagattacgaagcaagcggttaaggat
gcgttcaagacgccgcgcaaaatcaatctcgatctggttaacgcgcagcaagcgcgccgt
attctcgatcggctggtaggctataagatcagcccgctgctttggaagaaggtcaagaaa
gggctgtcggccggccgcgtgcaatcggtcgccgtcaagctcgtgtacgaccgcgagaac
gagatcaaggcgttcgtgccggaagagtattggacgattaccgccaagctgcaggcaggc
agctccgaattcgaagcgaagtttcacagcctgaaaggcgagaagaaggagctgtccaat
cagcaggaagtcaacgaaattttggcgggactggaaaaagcggagttcgttgtcggcgag
gtaagggagaaggagcggcttcgcaatccttcgccgccgtttattacgagctcgctgcag
caggaggccgcccggaagctcaacttccgcgcttccaagacaatgtcggttgcgcagcaa
ttatatgaaggaatcgatctcgggagcgaaggaaccgtaggtttgattacttacatgcgt
acggactcgacgagaatttcgccggttgcccaggaagaagcgcagcaatttatcgtgcaa
aaatatggggaagcctattatcccgaaacgccgcgggtatacatcaagaaagccgccaac
gcccaggacgcgcacgaagcgatccgtccgagctcggtgctgcgggagccggagcacatc
aaggagcatttgagccgggatcaattccgcttgtataaactggtgtgggaacggttcgtg
gcgagccagatggcttcggccgttctggatacgatgacggtcgacattgcggcgggagat
acggtattccgcgcggtcggttccaaaatgaagtttccaggctttatgaaggtctatgtg
gaaggcaatgacgacgggacgacggaagaagataaactgctgcctcctctgaaacatgga
gataaagtgaagcggaagcagatcgatccgaagcagcatttcacgcagccgcccccgcgc
tatacggaagcccggctggtccgcgcgctggaagaaatgggaatcggccgtccgagcact
tacgcgcccacgctcgaaacgattcaaaaacgcggttatgtggcgatagaagagaagaag
tttattccgaccgagctcggcgagctggtcattcagcagatgatcgaattttttccggaa
atcctcgacgtcgagtttaccgcccatatggaagaggagctcgaccatgtagaagaaggt
aaggaagattgggtgaaggtactcaattccttctatgtatctttcgagaagcggctggaa
gtggcggaagaggaaatggagaagatcgagattcaggatgaagtttccgatgagatttgc
gagaaatgcggccgtcatctcgtttataagatgggccggttcggcaagtttctagcttgc
tcgggatttccggattgccgcaacacgaaaccgatcgtcaaagatatcggcgtgacgtgt
ccgagctgcaaagaagggaagatcatcgagcgccgcagtaaaaaaggccgcgtgttctat
ggctgcgatcgctatcccgaatgcgaattcgtatcctgggataagccggtcggccagcct
tgtccgaaatgcggatcgatgcttatcgagaaacggaacaagaacggcgtgttccaccaa
tgcatccaatgcgattttaaggacgaagtgcaggaaaaagaataa
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