Pseudoxanthomonas koreensis: ACEJ41_01570
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Entry
ACEJ41_01570 CDS
T10879
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkq Pseudoxanthomonas koreensis
Pathway
pkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEJ41_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkq03019
]
ACEJ41_01570
Enzymes [BR:
pkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEJ41_01570
Messenger RNA biogenesis [BR:
pkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEJ41_01570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XGI14361
LinkDB
All DBs
Position
complement(335733..337115)
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AA seq
460 aa
AA seq
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MSFESLGLAPFLLRALSEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQAVSRGPRKPRVLVLAPTRELATQVHDSLRDYGKHLRIPSAVIYGGVGMGNQL
DALRRGVDLVVACPGRLIDHMERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPR
QNRQTLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETITHRVHPVDTARKRELLLH
LLAQDTRVQTLVFAKTKHGSDKLVTFLEKSGIQAAAIHGNKSQGQRLRALGDFKSGKVKV
LVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGSTGEALSLVSQDDAKYLR
QIVRLLDRDMEIRDLPGFEPQVPIRWGNSAPGKTEVPGGQRPPRKPGGGRGRRPHGDGQR
HAHAGAKSHGGQRDGARQPADGTRGRRRGGNDGPRRDATR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgaatccctgggccttgccccgttcctgctgcgcgcgttgtccgagcagggc
tacgaaacccccaccgcgatccagcagcaggccatcccgctggtgctggcaggccacgac
ctgcttgccggcgcccagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcaccgcgccgcaagcggtgagccgcggcccgcgcaagccgcgcgtgctg
gtcctggcccctacccgcgagctggccacccaggtgcacgacagcctgcgcgactacggc
aagcacctgcgcattcccagcgcggtgatctacggcggcgtgggcatgggcaaccagctc
gatgcgctgcgccgcggcgtggacctggtggtggcctgcccgggtcgcctgatcgaccac
atggagcgccgcagcgtggacctgtccgggatcgagatcctggtgctggacgaggccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgcgg
cagaaccggcagaccctgctgttctcggccaccttccccgagagcatcaagcagctggcg
atggagttcatgcgcaacccgcgcgaagtccaggtgactccgcagaacaccgtggccgag
accatcacccaccgcgtgcatccggtcgacaccgcccgcaagcgcgagctgctgctgcac
ctgctggcgcaggacacgcgcgtgcagaccctggtgttcgccaagaccaagcacggcagc
gacaaactggtcaccttcctggagaagtccggcatccaggccgcggcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgggcgacttcaagtccggcaaggtcaaggtg
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgaccagttgccgcgggtgatc
aactacgacctgccgatggtggccgaggactacgtgcaccggatcggccgcaccggccgc
aacggctcgaccggcgaagcgctgtcgctggtgtcgcaggacgacgccaagtacctgcgc
cagatcgtgcgcctgctggaccgcgacatggaaatccgcgacctgcccggcttcgagccg
caggtgccgatccgctggggcaacagtgccccgggcaagaccgaagtgccgggcgggcag
cgtccgccgcgcaagcccggtggcggccgtggccgccgtccgcacggcgacggccagcgc
catgcgcatgccggcgccaagtcgcacggcggccagcgcgatggcgcgcggcaaccggcc
gacggcacccgcgggcgccggcgcggtggcaacgatggcccgcgtcgcgacgccacgcgc
tga
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