Pseudoxanthomonas koreensis: ACEJ41_03225
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Entry
ACEJ41_03225 CDS
T10879
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pkq Pseudoxanthomonas koreensis
Pathway
pkq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACEJ41_03225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkq03021
]
ACEJ41_03225 (rpoC)
03400 DNA repair and recombination proteins [BR:
pkq03400
]
ACEJ41_03225 (rpoC)
Enzymes [BR:
pkq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEJ41_03225 (rpoC)
Transcription machinery [BR:
pkq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEJ41_03225 (rpoC)
DNA repair and recombination proteins [BR:
pkq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEJ41_03225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XGI14663
LinkDB
All DBs
Position
697268..701467
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPTKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPLERRQLLNEEQYLIARQEHGDDFDAAM
GAEAVYELLRTIDLQAEMARLREEIAATGSETKLKRLTKRIKLVEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENRKGEGMVFSDVAEVKRAYDNR
VVELHAKVKVRITELVTEEDGTKQRKTSIVDTTVGRALLAEILPEGLPFELANTELTKKN
ISRLINSCYRKLGLKDTVVFADQLMYTGFAFATRAGVSIGIDDMLIPDEKKGILNEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTDKVVNAKGEEIAQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTVHGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEIWVARLEEAGVQAIKVRSTITCESAFGVCSHCY
GRDLARGHLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSITVKTTGSAK
FTNLKSVEHAAGHLVAVSRSGEISILDPHGRERERYKLPYGATITVKDGADVKAGQSVAN
WDPHNHPIVSEVAGFIRFVDFVDGITVIEKTDELTGLASREITDPKRRGSQGKDLRPLVR
IVDKDGKDLSIPGTDLPAQYLLPPRSLVNLQDGVPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGVVSFGKDTKGKQRLIIRDGESGEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEISDQGGSKFLNGEQAERQRVIEENARLVARNEIPAKFEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDGLRGLKENVIVGRLIPAGTGLAYHSQRRRSASGLTESE
MQTLAGAPEPAATPEAAGE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaaccagcagcgccagacgctggatttcgacgcgatc
aagatcgccctggcttcgccggacctgatccgctcgtggtccttcggcgaggtgaagaag
cccgagacgatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcgggccgaccaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgagaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggccatatcgacctggccagcccggttgcgcatatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcatcctgtat
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgagcgtcgccagctgctc
aacgaggagcagtacctgatcgcgcgccaggagcacggcgacgacttcgacgccgccatg
ggcgccgaggcggtgtacgagctgctgcgcacgatcgacctgcaggccgagatggcccgc
ctgcgcgaagagatcgccgccaccggttcggagaccaagctcaagcgcctgaccaagcgg
atcaagctggtcgaggccttcatcgagtccggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgcttc
gcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggaactcaatgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggttgacgcgctgatggacaacggccgccgtggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtcatcgtggtcggcccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccacgatcaaggccgccaagaagctg
gtcgagcgtgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgctgctgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtcccgctgagcctggaggcccagctggaagcg
cgcgcactgatgatgtcgaccaacaacatcctctcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctcggcctctactacatgagccgcgccctggagaacagg
aagggcgagggcatggtgttctcggatgtggccgaggtgaagcgcgcctatgacaaccgg
gtggtcgagctgcacgccaaggtcaaggtccggatcaccgagctggtgaccgaggaggac
ggcaccaagcagaggaagacctcgatcgtggataccacggtcgggcgcgcgctgctggcc
gagatcctgccggagggcctgccgttcgagctggccaacaccgagttgaccaagaagaac
atcagccgcctgatcaactcctgctaccgcaagctgggcctgaaggacaccgtggtgttc
gccgaccagctgatgtacaccggcttcgccttcgccacccgcgcaggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctgaacgaggccgaggccgag
gtcctggagatccaggagcagtaccagtccggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggcaccgacaaggtggtcaacgccaagggcgaggaaatcgcgcagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgccagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgccgatcaag
gccaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggcgcgcga
aagggcctggccgataccgcgctcaagaccgccaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacgtggtgatcaccgaggtcgactgcggcacggtgcatggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgaccgcgtgctc
ggccgcgttgtggccgaggacgtgttcctgcccggcaacgacgaggatcccatcgtcacc
cgcaacaccctgctggacgagatctgggtggcgcggctggaagaggctggcgtgcaggcg
atcaaggtccgctcgaccatcacctgcgaatcggcgttcggcgtgtgctcgcattgctac
ggccgcgacctggcccgtggccacctggtcaacatcggcgagtccgtgggcgtgattgct
gcccagtcgatcggcgagcccggtacccagctgaccatgcgtaccttccacatcggcggc
gcggcttcgcgtgcggcggcggtggacagcatcacggtcaagaccaccggctcggcgaag
ttcaccaacctcaagtcggtcgagcatgccgccggccacctggtggcggtgtcgcgttcg
ggcgagatctccatcctcgacccgcacggccgcgagcgcgagcgctacaagctgccgtac
ggcgcgaccatcaccgtcaaggatggtgccgacgtcaaggccggccagtcggtcgccaac
tgggacccgcataaccacccgatcgtgtccgaggtggccggtttcatccgcttcgtggac
ttcgtcgacggcatcaccgtcatcgagaagaccgacgagctgaccggcctggcctcgcgc
gagatcaccgatcccaagcgccgcggctcgcagggcaaggacctgcgtccgctggtgcgc
atcgtcgacaaggacggcaaggacctgagcatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgctggtgaacctgcaggacggcgtgccggtgggcgtgggcgac
gtggttgccaagatcccgcaggaggcctccaagacccgcgacatcaccggcggcctgccg
cgcgtggccgacctgttcgaggcgcgcaagccgaaggatcctgcgatcctcgccgagcgt
tcgggcgtggtcagcttcggcaaggacaccaagggcaagcagcgtctgatcatccgtgat
ggcgagagtggcgagcacgaggagctgatccccaagtaccgccagatcatcgtgttcgag
ggcgagcacgtgaccaagggcgaaaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgctcggtatcgagccgctggcggcctacctggtcaaggagatccaggacgtg
taccggctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccggcagatg
ctgcgcaaggtcgagatttccgaccagggtggttcgaagttcctcaatggcgagcaggcc
gagcgccagcgcgtcatcgaggagaacgcccgcctggtggcccgcaacgaaatcccggcc
aagttcgagccggtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctccttccaggagaccacccgcgtgctgaccgaggcggccgtgcgcggcacc
cgcgacggcctgcgcgggctcaaggagaacgtcatcgtcgggcgcctgatcccggccggt
accggcctggcgtaccacagccagcgccgccgcagtgcctccggcctcaccgagtcggag
atgcagacgctggccggggcaccggagccggccgcgacgccggaagccgccggcgagtaa
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