Pseudoxanthomonas koreensis: ACEJ41_04675
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Entry
ACEJ41_04675 CDS
T10879
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pkq Pseudoxanthomonas koreensis
Brite
KEGG Orthology (KO) [BR:
pkq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkq03009
]
ACEJ41_04675 (rlmD)
Enzymes [BR:
pkq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACEJ41_04675 (rlmD)
Ribosome biogenesis [BR:
pkq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACEJ41_04675 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
TRAM
MTS
RrnaAD
PCMT
Methyltransf_11
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_23
TRM5-TYW2_MTfase
Methyltransf_15
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
XGI14935
LinkDB
All DBs
Position
1012312..1013625
Genome browser
AA seq
437 aa
AA seq
DB search
MARFDRTPFQIQILDLSHDGRGVARHDDGKAVFVSGALPGETVLAEPTARSRRFDEARTL
EVLDASPERVVPRCGHFGTCAGCVLQHLAQDRQIAAKQRVLLENLERIGKVAPGVVLAPL
TDQAWGYRRKGRFSVRRVNKKDRTLVGFREQDPRFVADLAQCYTVVPAIGMKIQELSALV
DGLQAREHIPQIEFIAGDDAIALTVRHLVPLAEADRAALAAFGREHGFAIFLQPKGVDSV
HPLEEPAPVLSFRLPQWDVELAFEPLDFIQVNAGLNQKMIALALELLDTRPEHRVLDLFC
GLGNFTLPLARQVREVVGVEGDAGLVARARANGQRNGLGNARFFAADLATDQRGAPWMRQ
GFDRLLLDPPRSGADEVLRQMPLKGIDRIVYVSCHPGSLARDAGFLVHEHGYRLVSAGAM
DMFPHTAHVESIALFQR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgattcgaccgcacgcccttccagatccagatcctcgacctgagccacgatggc
cgcggcgtggcccgtcacgacgacggcaaggcggtgttcgtgtccggggcgctgccgggc
gagaccgtgctggccgagccgaccgcgcgcagccgccgcttcgacgaggcgcgcacgctg
gaggtgctggatgcgtcgccggagcgggtggtgccgcgctgcgggcacttcggcacctgc
gccggttgcgtgctgcagcaccttgcccaggaccgccagatcgcggccaagcagcgggtc
ctgctggagaacctggagcggatcggcaaggtagcgccgggcgtggtgctggcgccgttg
accgaccaggcgtggggctaccggcgcaagggacggttctcggtgcgccgggtcaacaag
aaggaccggaccctggtcggcttccgcgagcaggatccgcgcttcgtggccgatctggcg
cagtgctacacggtggtgccggcgatcggcatgaagatccaggaattgtcggcgctggtg
gatggcttgcaggcgcgcgagcacatcccgcagatcgagttcatcgccggcgacgatgcc
atcgcgctgacggtgcgccacctggtgccgctggccgaggccgaccgtgccgcgctggcg
gcattcggtcgcgagcatggtttcgccatcttcctccagcccaagggcgtggacagcgtg
catccgctggaggagccggcaccggtgctgtcgttccggctgccgcagtgggatgtggag
ctggcgttcgagccgctggatttcatccaggtcaacgcggggctcaaccagaagatgatc
gcgctggcgctggagttgctggatacgcgtccggagcaccgggtgctggatctgttctgc
gggctgggcaacttcaccttgccgttggcgcgccaggtgcgcgaggtggtgggtgtggag
ggtgacgcggggctggttgcgcgggcgcgggccaatggacagcgcaacgggttggggaat
gcgcggttcttcgctgcggacctggccaccgatcagcggggtgcgccgtggatgcggcag
ggttttgatcggttgttgctggatccgccgcggtcgggtgcggacgaggtgctcaggcag
atgccgttgaaggggatcgatcggatcgtctatgtgagttgccatccgggttcgctggcg
cgcgatgcgggtttcctggtgcacgagcatgggtatcggctggtcagcgcgggggcgatg
gacatgttcccgcacaccgcgcacgtggaaagcatcgcgctgttccagcgctga
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