Pseudoxanthomonas koreensis: ACEJ41_05185
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Entry
ACEJ41_05185 CDS
T10879
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pkq Pseudoxanthomonas koreensis
Pathway
pkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEJ41_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkq03019
]
ACEJ41_05185
03009 Ribosome biogenesis [BR:
pkq03009
]
ACEJ41_05185
Enzymes [BR:
pkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEJ41_05185
Messenger RNA biogenesis [BR:
pkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEJ41_05185
Ribosome biogenesis [BR:
pkq03009
]
Prokaryotic type
rRNA helicases
ACEJ41_05185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Flavi_DEAD
DUF5817_CT
Motif
Other DBs
NCBI-ProteinID:
XGI15030
LinkDB
All DBs
Position
1122864..1124759
Genome browser
AA seq
631 aa
AA seq
DB search
MSAPTPESPAAPTFGELGLPETLLAALSAVGYESPSPIQSATIPALLSGRDVLGTAQTGT
GKTAAFALPILTRLEPSQQKPQALVLAPTRELAIQVAEAFQTYAARTPGFQVLPIYGGQG
YGPQLHALRRGVHVVVGTPGRVIDHLERGTLDLSQLKCLVLDEADEMLRMGFIDDVETVL
KKTPPTRQVALFSATMPAQIRRIAQTYLRDPVEVTIAAKTTTAANIRQRYWFVSGLHKLD
ALTRILEAEPFDAMIVFARTKAATEELASKLQARGVAAAAINGDMQQQQRERTIAQLKDG
RLDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGEAILFVTPREK
GMLRAIERATRQPIEEMRLPSVAAVNDRRVARFFEKISGALETGGLEPYHELVARYAGEH
DVGATEIAAALARLLQGDTPLLLDARDEPAPRERTARHERELRPFAATDAPGRAHAPRPP
RHPSGDEGHAPRPPRQAKPPRAAPDTGMEAYRVEVGHVHGVKPGNIVGAIANEAGLESRF
IGRIDIHEDHSILDLPEGMPPEIMAHLRKSWVVGQQLRISRWDGSHAPGEAVEPRPRARP
HAARANSARPAGKPARAPAKPHRKGPPKPGG
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccccaacccccgaatcccctgccgcgccgactttcggcgaactcggcctgcca
gagacgttgcttgccgccctgtccgcggtcggctacgaatcgccatcgccgatccagtcg
gccaccatcccggcgctgctgtccggccgcgacgtgctgggcaccgcccagaccggcacc
ggcaagaccgctgccttcgcgctgccgatcctgacccggctggagccctcgcagcagaag
ccgcaggcgctggtgctggcgcccacccgcgagctggccatccaggtggccgaggcgttc
cagacctacgctgcgcgcaccccgggcttccaggtcctgccgatctacggcggccagggc
tatggcccgcagttgcacgcgctgcgccgcggcgtgcacgtggtggtggggaccccgggg
cgggtgatcgaccacctcgagcgcggcaccctggacctgtcgcagctcaagtgcctggtc
ctggacgaggccgacgaaatgctgcgcatgggcttcatcgacgatgtcgagacggtgttg
aagaagaccccgcccacgcgccaggtggcgctgttctcggccaccatgcccgcgcagatc
cggcgcatcgcgcagacctacctgcgcgacccggtcgaggtcacgatcgcggcaaaaacc
accaccgcggccaacatccgccagcggtactggtttgtcagcggcctgcacaagctcgac
gcgctgacccggatcctggaagccgagccgttcgacgcgatgatcgtgttcgcccgcacc
aaggccgccaccgaggaactggccagcaagctgcaggcgcgcggcgtggccgctgccgcg
atcaacggcgacatgcagcagcaacagcgcgagcgcaccatcgcccagctcaaggacggg
cgtctggacgtgctggtggccaccgacgtggccgcgcgcgggttggacgtggagcgcatc
agccacgtgctcaactacgacatcccctacgacaccgaaagctacgtgcaccgcatcggc
cgcaccggccgcgccgggcgcaacggcgaggcgatcctgttcgtcaccccgcgcgagaag
ggcatgctgcgtgcgatcgagcgcgccacccggcagccgatcgaggagatgcgcctgccc
agcgtggccgcggtcaacgaccgccgcgtcgcgcgtttcttcgagaagatttccggcgcg
ctggaaaccggcgggctggagccctaccacgagctggtcgcgcgctatgccggcgagcac
gatgtcggcgccaccgagatcgccgcggcactggcgcggctgctgcagggcgatacgcca
ctgctgctggacgcgcgtgacgagccggccccgcgcgaacggaccgcacgccacgagcgc
gagctgcgtccgtttgcggccaccgatgcccccggccgtgcgcacgcgccgcgcccgccg
cgtcaccccagcggcgacgaaggccacgccccgcgcccgccgcgccaggccaagccgccg
cgcgctgcgcccgatacgggcatggaggcctaccgggtcgaagtcggccatgtgcatggc
gtcaagccgggaaatatcgtgggcgccatcgccaacgaggccgggctggaaagccgcttc
atcggccgcatcgacatccacgaggaccattcgatcctcgacctgcccgagggcatgccg
ccggagatcatggcccacctgcgcaagtcctgggtcgtcggccagcagctgcggatcagc
cgctgggacggcagccacgcgcccggcgaggcggtcgagccgcgtccacgtgcgcgcccg
cacgcagcgcgcgccaattccgcgcggcctgcgggcaagcccgcacgggcgccggccaag
ccccatcgcaagggcccgccgaagccgggcggctga
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