Pseudoxanthomonas koreensis: ACEJ41_07905
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Entry
ACEJ41_07905 CDS
T10879
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pkq Pseudoxanthomonas koreensis
Pathway
pkq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACEJ41_07905 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkq03400
]
ACEJ41_07905 (sbcB)
Enzymes [BR:
pkq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACEJ41_07905 (sbcB)
DNA repair and recombination proteins [BR:
pkq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACEJ41_07905 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACEJ41_07905 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACEJ41_07905 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XGI13056
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All DBs
Position
1730696..1732135
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AA seq
479 aa
AA seq
DB search
MADTFLFYDLETFGADPRRSRIAQFAALRTDPELNPVEAPVSLFVQPAQDLLPSPQATLI
TGITPQHALREGVPEAEAAARIVEEMARPGTCTLGYNSLRFDDEFVRHTLFRNFFDPYER
EWRGGNSRWDLLDVLRLAHALRPDGIAWPRREDGATSFKLEHLAIANDVRDGDAHEALSD
VYATVGLARLFKRAQPRLWDYALKLRDKRHAASLLDTFAMQPVLHVSQRYPASRMCAAVV
LPLAAHPSIGNRVIVFDLDGDIDALLEQDAAEIADRLYTPAADLPPGVARVPLKEVHLNR
SPMLVPWAHLRADDFQRLGLEPDALQARAERLRAHGPALAEKARQVFAGNRAPVQGDVDG
ALYAGFCGDGDRRLCTQVRATPATELGTRVFDFRDARLPELLFRYRARNWPDTLAPTERE
RWDDYRRHRLGDDSGLSEYGLSGYFAEIAALRASHAGDGGKQVLLDQLEQWGRDLQDGL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaccttcctgttctacgacctggagaccttcggcgccgacccgcgacgcagc
cgcatcgcccagttcgccgcgttgcgcaccgatccggaactgaacccggtggaagcaccg
gtcagcctgttcgtgcagccggcgcaggacctgctgccatctccgcaggccaccctcatt
accggcatcactccacagcatgcgctgcgcgagggcgtgcccgaggccgaggcagcggcg
cgcatcgtcgaggaaatggcccggcccggcacctgcaccctgggctacaactcgctgcgc
ttcgacgacgagttcgtgcgccataccctgttccgcaatttcttcgacccctacgagcgc
gagtggcgcggcggcaactcgcgctgggacctgctggacgtgctgcgcctggcccatgcc
ctgcgcccggacgggatcgcctggccgcggcgcgaggatggcgccacctcgttcaagctc
gaacacctggccatcgccaacgacgtgcgcgatggcgacgcgcacgaagcgctgtcggac
gtgtacgccaccgtcggcctggcccggctgttcaagcgcgcccagccgcggctgtgggat
tacgccctgaagctgcgcgacaagcgccatgccgccagcctgctcgataccttcgccatg
cagccggtgctgcacgtctcccagcgctatccggccagccggatgtgcgcggccgtggtc
ctgccgctggccgcgcatccgtccatcggcaaccgggtgatcgtgttcgacctggacggc
gacattgacgccttgctggagcaggatgcggcggagatcgccgaccggctctacaccccg
gctgcggacctgccaccgggcgtggcccgggtgccgctgaaggaagtgcacctgaaccgt
tcgccgatgctggtgccgtgggcgcacctgcgcgcggatgatttccagcgcctgggcctg
gagccggacgccctgcaggcgcgtgccgaacgcctgcgcgcgcacggcccggcactggcc
gaaaaggcccgccaggtattcgccggcaaccgcgcaccagtccagggtgacgtggatggc
gcgctctacgccggcttctgcggcgacggcgaccgccgcctgtgcacccaggtgcgtgcc
accccggccacggaactgggcacgcgggtgttcgacttccgcgatgcgcgcctgcccgaa
ctgctgttccgctaccgggcccgcaactggccggacacgctcgcgcccaccgagcgcgaa
cgctgggacgactaccgccgccatcgcctcggcgacgacagcggcctgtccgaatacggc
ttgtccggctacttcgccgagatcgccgcgctgcgcgccagccatgccggcgacggcgga
aaacaggtcttgctcgaccagctcgaacagtggggccgcgacctgcaggacgggctatga
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