Pseudomonas koreensis: AYO71_02105
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Entry
AYO71_02105 CDS
T04647
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYO71_02105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkr03019
]
AYO71_02105
Enzymes [BR:
pkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYO71_02105
Messenger RNA biogenesis [BR:
pkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYO71_02105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMT86380
LinkDB
All DBs
Position
complement(461165..463027)
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AA seq
620 aa
AA seq
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MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTIEAEKPEARERPDIRNPRNSRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPSREQRPSQPPRAAADRAPDEFLDDDIDN
FGNRVDYVPKAAPAGGRGRRPGAPAQGAGAPRGGQPQGRQNGPRNSNGSSTGTPPAKRSG
PRNGAPRDGQGRRDESAPRNRRPARDDQPRSEPAVQNPRSNGPKIMHKESKADRFPTPEQ
LDQLPSRPRGEKPALLTRNR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgtgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtggcggctcagacaggtaccggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaacct
cgcgtgctggtcctgaccccgacccgcgaactcgcggcccaggtgcacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatgtcccgtggcgtcgacgttctcgtcgcctgcccgggtcgcttg
ctcgacctcgccggccagggcagcgtcgatctgtcccacgtggaaattctcgttctcgac
gaagccgaccgcatgctcgacatgggttttgtccacgacgtgaagaaagtcctcgcgcgt
ctgccggccaagcgtcagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtgttccgcctgccggccagccacaaacgtgcgctgctg
gcgcacctgatcaccgccggcgcgtgggaacaggtactggtttttacccgcaccaagcac
ggcgccaaccgtctcgctgaatacctggacaaacacggcctgccggctgtggcgatccac
ggtaacaagagccagaacgcgcgcaccaaagccctggccgacttcaaggccggcgaggta
cgcattctggttgccaccgacatcgccgcccgtggcctggacatcgatcagttgccccat
gtggtcaacttcgagctgccgaacgtcgatgaagactatgtgcaccgtatcggccgtacc
ggccgcgccggccgttcgggcgaggcgatctcgctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagattgccgacggcgatctgatgggcttc
gactccagcaccatcgaagccgagaagccggaagcccgcgagcgtccggacatccgcaac
ccgcgcaattcccgtggcccgcgtggcgacggcccgaatggcggcggcggtggtggtggt
cgcaaggacaaaggcaaagacaagggcaaggaaaaaccggccggtgaacgtggcgagcgc
cctgcccgtcagcagaaaccgcgcgaaggcaccccgagccgcgaacagcgcccgagccag
ccaccgcgtgcagcggctgaccgtgccccggacgaattcctcgacgacgatatcgataac
ttcggtaaccgcgtcgactacgtgccgaaagccgctcctgccggtggccgtggccgtcgt
ccgggcgcaccggcgcaaggcgcgggcgcaccccgtggcggtcagccacagggtcgccag
aacggtccgcgcaacagcaacggctcgagcaccggcactccaccggccaaacgcagcggc
ccgcgcaatggcgccccgcgtgacggtcagggtcgtcgcgacgaatccgcgccgcgcaac
cgccgcccggcccgtgacgatcagcctcgcagcgaaccggccgtgcagaacccgcgcagc
aacgggccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgacgcctgagcag
ctcgatcaactgccaagccgcccgcgtggcgagaaaccagcactgctgacccgcaatcgc
tga
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