Pseudomonas koreensis: AYO71_04135
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Entry
AYO71_04135 CDS
T04647
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYO71_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkr03019
]
AYO71_04135
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_04135
Enzymes [BR:
pkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYO71_04135
Messenger RNA biogenesis [BR:
pkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYO71_04135
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYO71_04135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMT86757
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All DBs
Position
927885..929813
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AA seq
642 aa
AA seq
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MHHTLEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLKSRGISAGSIDSAQSREDANDVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIALDDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMTERPGQPSIVYVTLQKTAE
HIAEHLQRNGIQAEAYHAGLPHDQREDIQRRFMAGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIHYVLEELK
ASVPDGQWEFLLGPLADQSNIRSLPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPEAL
LQRFEGERRDFVAAIIRTSTRARTWATVDFEAMFSQYSAERNRVVTALDYFQEKGWVELE
SKQMTEVYSLLQSDFASDALSAELHEYFTRHEETEVARIHAMLELFATERCLGYRLAEYF
GDHNAPERCGHCSVCHGQIARLPEPPPLPPLVDKNFAQLCGEFIHRHEQQTGRIPSAERL
TRFLCGISVPLFTKLKARAIPGFAALEEYPYAQVREWAQEHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcaccacaccctggaacaggtttttggttatccacagtttcgccccggtcaggaggcc
gctgtcagcgcggtgctggcggggcgatccgcggcggcgatctttcccaccggctccggc
aaatcgctttgctaccaactgccggcacttttactgccacacctgacattggtggtctcg
ccgttgctggcgttgatgcaggatcaactggcgtttctcaagtcccgcggcatctcggca
ggcagtatcgattcggcgcagagccgcgaggatgccaacgacgtcatggcccgtgcgcgt
tcgggcgagctgaaaattctgatgatctccgtcgagcggttgaagaacgagcgcttccgc
aatttcctgcagcaggtgccgatctcgttgctggtggtcgacgaggcgcactgcatttcc
gaatggggccacaactttcggccggactatctgaaactccccgactaccagcgtcagttc
aacattccgcaggctttgctgctcaccgccacggcgacaccaaaagtcatcgccgacatg
caggccaaattcgccatcgctctggacgatgtagtgaccactggtttctatcggcccaac
ctcaatttgctggtcgagcctgtacgcggtcaggacaaacgccggcgtctggtcgaatgg
atgaccgagcgtcctgggcaaccgagcattgtctacgtgacgttgcagaagaccgccgag
cacatcgccgagcatcttcaacgcaatggaatccaggccgaggcttaccacgccggtttg
ccccacgatcagcgtgaagacattcaacgccgcttcatggccgggcagtccaattgcatt
gtcgccaccattgccttcggcatgggcatcgacaagagcgacatccgcaacgtggtgcat
tttgatctgcccaaatccatcgaaaactacagccaggaaatcggccgcgccggacgcgac
ggacagccctccgactgcctggtactggccaaccgcgacagcctcaatgtgctggaaaac
ttcgtctacggtgatacgcccgaacgcgacgggattcattatgtgctcgaagagctcaaa
gcctcagtgccggacggacaatgggagtttttgcttgggccattggcggatcagagcaac
attcgctcgttgccgttgaagacgttgttggtgcagctggaactgcgaggcctgatcgcg
ccgcgctacgcttattacgctgaataccgcttcaaatatctgcttgagcctgaagcattg
ctccagcgcttcgaaggcgagcgcagggatttcgttgcggcgatcatcaggacgtccaca
cgagcacgcacctgggccacagtagatttcgaggcgatgttttcgcagtattccgccgag
cgcaatcgcgtggtgacagcacttgattacttccaggaaaaaggctgggtcgagcttgaa
agcaagcaaatgaccgaggtttacagcctgctgcaaagtgattttgccagcgacgccctg
agcgctgagctgcacgagtacttcactcgtcacgaagagactgaagtggcgcgaattcac
gccatgcttgagttgttcgccaccgaacgctgcctgggttatcgcctggccgagtatttc
ggtgatcacaatgcccccgagcgttgtggccattgttcggtatgtcacggccagatcgcg
cggttgccggagccgccgccattgccgccgcttgtggataaaaacttcgcgcagttgtgt
ggtgaatttatccacaggcatgagcagcaaacagggcgtattccatcggccgaacgtctg
acgcggtttctgtgcggaatcagcgtgccgttgttcaccaaactcaaggcgcgggcgata
ccgggttttgctgcgttggaagaatacccctacgcgcaggtccgcgagtgggcgcaagag
cacctttga
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