Pseudomonas koreensis: AYO71_05455
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Entry
AYO71_05455 CDS
T04647
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYO71_05455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkr03019
]
AYO71_05455
03016 Transfer RNA biogenesis [BR:
pkr03016
]
AYO71_05455
Enzymes [BR:
pkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AYO71_05455
Messenger RNA biogenesis [BR:
pkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYO71_05455
Transfer RNA biogenesis [BR:
pkr03016
]
Prokaryotic type
tRNA degradation factors
AYO71_05455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AMT87009
LinkDB
All DBs
Position
1239349..1241979
Genome browser
AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVVKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPQVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEARKLRGEYTDVVP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHAGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSAENDGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPAAKAAEEKAPAK
TASRRPAKEKVAEAYRPSDAVAKNAELRKSRELKKALLADAKNGGKAASGGKTGRSAPDR
ATDGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagccgcgaactgatcctggcgcacctcgccgatcggggttcgcctgctgcc
cgcgagcaactggtcgaagagtttggtctgaccacagaagaccagatcgaggccctgcgc
cgccgcttgcgcgccatggagcgcgacgctcaactgatctacacccgccgtggcacttac
gcgccggtggacaagctcgacctgatcctcggccgcatcagtggtcaccgtgacggtttc
ggcttcctggtgccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgacggtgaccgcgcgctggccagggtttccgggctcgaccgtcgtggtcgc
cgtgaaggcgtgatcgtcgaagtggtttcccgcgctcacgaaaccatcgtcggccgctac
ttcgaagaaggcggcatcggtttcgtcgttgccgacaatccgaagatccagcaggaagtg
ctggtgacgccgggccgcaacgccaatgcgcagatcggtcagttcgtcgaggtgaaaatc
acccactggccaacgccgcgtttccagccgcaaggcgatgtggtcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgttgccctgcgcacttacgacattccgcacgtc
tggcctgaagcggttgtgaaagaagccgccaagctcaagccggaagttgaagaaaaagac
aaagagaagcgcatcgacctgcgtcatctgccgttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgcggtctactgcgaagccaaaccgggcaagctgcgtctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagttacgtgaagatcggttcg
gcgctggataacgaagctcaggttcgcggcaactcggtgtacttccccgagcgcgtgatt
ccgatgctgccggagcaactgtccaacggcctgtgctcgctgaacccgcaagtcgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaagcggtgatccattcccacgcccgtctgacctacaacaaggtcagcgcgatgctg
gaaacgccgaaggctaccgaagcgcgcaaattgcgcggcgagtacaccgacgtcgtgccg
cacctcaagcagctctacgcgttgtacaaggtattgctcgccgcccgtcatgtgcgtggc
gcgatcgatttcgaaacccaggaaacccggatcattttcggttccgagcgcaagattgcc
gaaatccgtccgaccgtgcgcaacgatgcgcacaagctgatcgaggagtgcatgctggcc
gccaacgtggccactgccgaattcctcaagaagcacgaaatccctgcgctgtatcgcgtt
cacgccggtccgccgccagagcgtctggaaaagctgcgcgcgttccttggtgagctcggc
ctgtccctgcacaaaggcaaggatggtccgtcgccgaaggattatcaggctttgctcgcg
agcatcaaggatcgtccggatttccacctgatccagactgtgatgctgcgttcgttgagt
caggcggtgtacagcgctgaaaacgacggccacttcggcctgaattacgaagcctatacc
cacttcacctcgccgatccgtcgttatccggacctgctcacgcaccgcgcgatccgcagc
gtgatccattcgaaacaggacaccccgcacgttcgtcgtgccggtgcgatgaccattccg
aaagcgcgcatctatccgtacgacgaagcggcgctggagcagcttggcgagcagtgctcg
atgagcgagcgccgtgccgacgaggcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgaatcgttcccgggcgtaatcaccgctgtgaccggtttt
ggtctgttcgtcgaactgaccgatatctacgtcgaaggcctggtgcatgtcaccgcgctg
ccgggcgattactaccacttcgatcctgtgcatcaccgcttggcgggcgagcgcaccggt
cgcagtttccgtcttggcgacaccgttgaagtacgcgtcatgcgcgtcgacctcgatgag
cgcaagatcgacttcgagatggccgagaaaaccatcagcgcgccgatcggtcgcaagaaa
cgtggcgccgaaaccgctgcgcctgctgccaaggctgcggaagaaaaggctccagcgaaa
accgccagccgtcgtccggccaaggaaaaggttgccgaagcctatcgtccgagcgatgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgaattgaagaaggccttgctagccgat
gcgaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgacagg
gcgaccgacggcaagccagccaaaccgagcaaacaccgtaagggcccgccaaaagcgggt
tccgctccagccaaaagtggcggggcgcgtaaaccgaaggcgaagtcatga
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