Pseudomonas koreensis: AYO71_06250
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Entry
AYO71_06250 CDS
T04647
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYO71_06250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_06250
Enzymes [BR:
pkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYO71_06250
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYO71_06250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AMT87156
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All DBs
Position
1434567..1438019
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AA seq
1150 aa
AA seq
DB search
MSDAQSLNAAFMVVQSNSLDELRSLVVSIMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDLGGCGIAAAIDVQLPGSFMWQLYRMVLGREEIPAKSLLDKAPLTWRLMRLLPQV
IDRPHFEPLQRFLTNDSDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGRHQLRNVRGE
IKPLPATSCWQAELWRALLDDVGEQGMAQSRAGVHQRFMERINILDKAPAALPPRVIVFG
ISSLPAQVLEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKSGMPVVL
DAETLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRAAFRDGRIDLFSEAQPHNMLNQL
QDDILELRPLNETRELWPAVDLTQDQSIRFHIAHSAQREVEILHDQLLARFSADPALRPR
DVIVMVPDIDSYAPHIRAVFGQLDRFDPRFIPFTLADQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVEERDLPTLHRWIEGAGVRWGMSAEQRAGLGLPEELEQNS
WHFGLRRMLLGYAVGSADACAGIEPYDEIGGLDAALIGPLVALLDALEIAHQQLTQPAQP
KEWGLRLQALMQVFFQASNEHDDYLLTQLEELRETWLETCEAVGLTDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARTQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWRSID
PTQDLLEALTEEHPLQPFSARYFHEGEQLFSYASEWQVLHQEKTQQSEAPLLAPYVQEEP
LTLALLQDFLRNPVRHFFTQRLKVYFEAAQAPLADEEPFVLDALQRYTLSDSLLEAALSQ
PDDVDQALHARALRLQNSGLLPMAGFGECLQRELIEPLPDLLQRYQQLLTLWPTPLSSAI
PVSLDLQCLRLEGWLSSLHRRADGGLLSVTTIPNSIGSIKTRKWHRLTKSWVTHLVACAS
EHALTTALVASDDTLLLEPMERDRALRLLGDLLLAWQSGMRQPLPIAIKTAFAWLSQTDP
VKAEATARKAYDGDGQTSNGERRESPALLRQYPDFDALLADETFTGWCDALYRPLFEAPW
RSLSSEGARA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgcccagtccctcaacgctgcattcatggtggttcagagcaacagtctcgat
gagctgcgcagtcttgtggtcagcatcatgcggcgctacccactggcacccctggaaaac
gaaatcgctttggtgcaaagcaacggcatcgcccaatggctcaaactggcattggccgaa
gatcctgaagacgatgaccttggcggttgcgggatcgctgcggcgattgacgttcaacta
cccggcagtttcatgtggcagctctatcgcatggtattgggacgagaagagattccggcg
aaatccctgctcgataaggctccgctgacctggcgcctgatgcgcctcttgccacaggta
atcgaccgcccacatttcgagccgctgcaacgcttcctcaccaatgacagcgatctgcgc
aagcgctatcaattgtcagagcgtctggccgatctgttcgaccaatatcaggtctaccgg
gccgactggctggaagattgggcggaaggccgccaccaactgcgcaatgtgcgaggtgaa
atcaagcctctgccagcgaccagttgctggcaggcagagttgtggcgagcgctgctggat
gacgtcggcgaacagggcatggcgcagagtcgtgccggcgtgcatcaacgcttcatggaa
cgcatcaacatactcgacaaggccccggctgcgctgccgccgcgcgtgatcgtctttggc
atttcttcattgcccgcacaagttcttgaagcgctcgccggtctggcgcgcttcagtcag
gttctgctttgcgtacacaacccctgtcgccatcactgggccgatatcgttgccgacaag
gatctgctgcgacatcaatacaagcgccaacaacgcaaaagcgggatgcccgttgtactt
gatgccgaaaccctgcatcagcacgcgcatccgttgctggccgcttggggcaagcaaggt
cgcgactatatcaacctgctcgacagctacgacgatcccaacagctaccgcgcagccttt
cgtgacggccgcatcgacctgttcagcgaagcccagccgcacaacatgcttaaccagctt
caggacgacatcctcgaattgcgccccctcaacgagactcgtgagctctggcccgctgtc
gacctgacgcaggaccaatcgatccggtttcacatcgcccacagtgcccagcgtgaagtc
gaaatcctgcacgatcaactcctggcgcgctttagcgccgacccggctctacgcccacgg
gacgtgatcgtgatggtccctgatatcgacagctacgcaccgcatatccgcgcggttttc
ggtcagctcgatcgatttgacccgcgcttcattccgttcactttggcggaccagggccag
cgtggccgcgatcctttgttgatcgcggtcgaacatttgctcaaattgccggacagtcgt
ttcccggtcagcgagattctcgacctgctcgatgttccagctctgcgtgctcgctttggc
gtagaggaacgtgacctgccaaccctgcaccgctggatcgagggtgccggcgtgcgttgg
ggcatgagtgccgaacaacgggccggtctcggattgcctgaggaactggagcagaacagc
tggcatttcggtctacgccgaatgctgctgggctacgccgtcggcagtgccgatgcatgt
gcaggtatcgagccttacgacgaaattggtgggctggatgctgccctgatcgggccactg
gtggctctgctggatgccttggaaatcgctcaccagcaactcacgcaacctgctcaaccg
aaagagtgggggctgcgcttgcaggcgctgatgcaggtgttctttcaggcgagcaacgag
cacgacgactacctgctgacccagctcgaagagcttcgcgagacttggctggagacttgc
gaggcggtcggcctgactgacgaattgccgctgactgtcgtgcgcgaagcctggctcgcc
gggctggatcagggccgattgtcgcaacgattcctcgccggtgcggtgaatttctgcacc
ttgatgccgatgcgtgccattcctttcaaactggtatgtctgctgggcatgaacgacggc
gattatccccgcgcgcagccgccgctggacttcgatctgatgggtagtgattaccgccca
ggcgaccgctcacgacgtgaagacgaccgttacctgttactcgaagcgctgttatccgca
cgcactcagctctatatcagttgggtcggtcgcagcattcgcgacaacagcgaacgaccc
gcctcggtgctcatcggccagttgcgcgatcacctcgccagcggctggcgttcaatcgac
cctacccaggatctattggaagcgctgaccgaagaacaccccctgcaacctttcagtgcc
cgctatttccacgaaggcgagcaactgttcagctacgccagtgagtggcaggtgttgcat
caagagaaaacgcagcaaagtgaagcaccgttactcgcgccatatgttcaagaggaaccg
ttgacgctggcattgctgcaggattttctgcgtaatccggttcggcattttttcacacaa
cgtctcaaggtctatttcgaggctgcgcaagcgccgttggccgatgaagaacctttcgtg
ctggacgcgctacagcgctacacgctgagcgacagtttgctggaagccgcactcagtcag
ccggacgatgtcgatcaggcactgcacgcccgggcgctgcgcctgcaaaacagtggtctg
ctgcctatggccggttttggcgaatgcctacagcgtgaactgatcgaaccgctaccggat
cttctgcagcgttatcaacagttgctgacgttatggccgacgccattgagtagtgcaatc
ccggtcagtctcgacttgcagtgtctgcggttggaaggctggctctcgagcctgcaccga
cgcgccgatggcggcctgctgtcggtcacgaccattcccaacagcatcggctcgatcaaa
actcgcaagtggcatcggctgaccaaatcgtgggttacccatctggtcgcctgcgccagc
gagcatgcgctgaccacggcattggtcgccagtgacgatacgttgttgctggagccaatg
gagcgagaccgagcgttgcgtttgctcggtgacctgcttcttgcgtggcaatcaggcatg
cgccagcccttgccgattgcgataaaaaccgcgttcgcctggttgtctcaaactgacccg
gtcaaagccgaagcaactgcgcgaaaagcctatgacggtgacggccagaccagcaacggc
gagcggcgtgaaagcccggcactgctccggcaatatcccgacttcgatgcattgttggca
gacgaaaccttcaccggctggtgcgacgccttgtaccgcccattattcgaagcgccgtgg
cgttccttgtccagcgaaggtgcgcgcgcatga
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