Pseudomonas koreensis: AYO71_06255
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Entry
AYO71_06255 CDS
T04647
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYO71_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_06255
Enzymes [BR:
pkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYO71_06255
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYO71_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
AAA_12
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AMT87157
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All DBs
Position
1438016..1441702
Genome browser
AA seq
1228 aa
AA seq
DB search
MSTKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLILGHGGETSGFARELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDEIVAPDGLIAQLRDQFDPLQWPGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQSLETDHSDLLGEVLRDYWRLFCYPMQGD
ALNWVRSNWGGPAALLPRVRGLFASERDTDEGKAPAELIEECLLERRAALVELKMPWRDW
ADELLALCHEGVASKTVDGRKMQARYFEPWFEKLKTWAEDESLEQLDIGTGFTRLTPDGM
AEAWKGPAPSHPGLDAMSGLKSSLDALPTPDAAVLQHAAKWVGARFEEEKRRRAEMGFDD
MLLRLDAALQSEGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNHPDTGLF
LIGDPKQAIYAFRGADIYTYLRARQATTGRLHTLGTNFRSSHGMVTAVNHVFERAESREQ
GRGAFLFREKTGENPVPFLPVESQGRKETLRIAGQDVAALNVWLLPSDQPLSGAVYRQQM
AAACASQITALLNGGQTGSAGFFQADDFKGLRPSDIAILVRDGKEAQAVRAELAARGVRS
VYLSDKDSVFAAQEAHDLLAWLKACAEPDVERSLKAALACTTLNLPLIELERLNQDEMVW
EARVMQFRGYRELWRKQGVLPMLRRLLHDFHLPQTLMQRSDGERVLTNLLHLSELMQQAA
AELDGEQALIRHLAELLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFIC
SAKPVDGSRLPLHYHDAAGKAQISLKPTPELIALADDERLAEDLRLLYVALTRAQHACWL
GVTDLKRGNNNSSVLHLSALGYLLGGGAALGESSELNRWLRDLQQDCPAIGISEMPQPTD
EHYQPPRNEAVLRATLRPKRKASENWWIASYSALRISDILSVGSDEAPDSPQAQKLFDDE
RLDPDAPHEISSGGADIHRFPRGPNPGTFLHGLLEWAGAEGFSVTREALEDAIARRCNLR
GWQGWITTLTDWLPHLLKSPLPIAGGQPPVVLEQLKQYRVEMEFWFASHKVDVLKLDEQV
RQHTHNGVARVAAEPVQLNGMFKGFIDLTFEHAGRYYVADYKSNWLGVDDQAYTVQAMEQ
SILDNRYDLQYVLYLLALHRQLKARLADYDYDRHIGGALYLFLRGTRAESRGVYFVRPPR
ELIERLDRMFQGKPEPKSEPAWEQGVLL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaaaacaccgttggctctggccttcccgctacgcggcagtcagttgatcgaa
gcaagtgcaggcaccggcaaaaccttcacgatttcggcactttatctgcggctgattctc
ggccatggcggcgagacaagcggttttgcacgcgaactgctgccgccgcaaatcctcgta
gtgacgtttaccgacgctgctaccaaagagctgcgtgaacgcattcggacacgcttggct
gaggccgcgcggttcttccgcgacgaaattgttgccccggacggactgattgcccagctg
cgcgatcagttcgatccgctgcaatggccgggctgtgccaaccgcctcgatatcgccgcg
cagtggatggacgaagccgccgtctcgaccattcacagctggtgtcagcgcatgctgcgc
gagcatgcgttcgacagcggcagcctgttcacgcaatccctggaaaccgatcacagcgat
ctgcttggcgaagtgttgcgcgattactggcgactgttctgctacccgatgcagggcgat
gcgctgaactgggtgcgcagcaattggggtggccccgccgcgttgttgcctcgggtgcgc
ggcttgtttgccagcgagcgtgacaccgatgaaggcaaggcgcccgcggagctgatcgaa
gagtgtttgctggagcggcgagcggcgttggtcgaactgaaaatgccttggcgtgactgg
gcagacgagctgcttgctctctgccatgaaggcgtcgccagcaaaaccgtcgatggccgc
aaaatgcaggcgcgttatttcgagccgtggttcgagaagctcaagacctgggccgaagac
gagtcgcttgagcaactggacattggcactggcttcacccgattgacgcccgatggcatg
gccgaggcctggaaaggcccggcgcccagtcatccgggactggacgccatgtccggactc
aagtcgagccttgatgccttgccgacgcccgatgctgctgttctgcaacacgctgccaag
tgggtcggcgcgcgttttgaagaagagaagcgccgtcgcgcagaaatggggttcgacgac
atgttgctgcgtctggatgccgcgctgcaatcggagggcggcgagcgtctggcaacgctg
atccgcgagcagttcccggtcgcgctgatcgacgaattccaggataccgacccggttcag
taccgcatcttcgagagcatttaccgtatcgaagacaatcaccctgacaccggcctgttc
ctgatcggcgacccgaagcaggcgatctatgcctttcgtggtgccgacatctacacctat
ctgcgcgcacgtcaggccactaccggccgtttgcatacactaggcaccaacttccgctcc
agccacggcatggtgacagcggtcaatcacgtgttcgaacgcgccgagtcccgagagcag
ggacgcggcgcgtttttgtttcgcgagaaaaccggcgaaaacccggtaccgttcctcccg
gtcgagtctcaggggcgcaaggaaacgctgcggattgccgggcaagacgtcgcagcactg
aatgtctggctactgcccagcgatcagccgctgtccggcgcggtctatcgccagcaaatg
gccgccgcctgcgccagtcaaatcaccgcactgctcaatggcgggcaaaccggcagcgct
ggtttctttcaagcagacgacttcaaaggtttacgcccttcggacatagcgatcctcgtc
cgcgacggtaaggaagcccaagccgtacgcgccgaactcgccgccagaggtgtacgcagt
gtttatctctcggacaaggattcggtgtttgccgcccaagaggcgcacgatctgctggcc
tggctgaaggcatgcgccgaacccgatgtcgaacgctcgctcaaggctgcgctggcttgc
accacattgaacctgccgctgatcgagctggagcggttgaaccaggacgaaatggtctgg
gaagcccgggtcatgcagttccgtggctatcgagagctctggcgcaaacagggcgtgttg
ccgatgttgcgccgcctgcttcacgacttccacctgccgcaaaccctgatgcagcgcagt
gacggcgaacgcgtgctgaccaaccttttgcacctctcggaactgatgcagcaagccgcc
gctgaactggacggggagcaagcgttgatccgccatctggccgagttgctggcactgtcc
ggtcaggccggtgaagagcagattctgcgtctggaaagcgacgagcaactggttaaagtg
gtgaccatccacaaatccaaggggctggaatatccgctggtgttcctgccattcatttgc
tcggcgaaaccggtggatggcagccgtttgccgctgcattaccacgacgctgcgggcaag
gcgcagatcagcctcaagcctacccccgagttgatcgcgctggctgacgatgagcgtctg
gccgaagatctgcgtcttctgtatgtcgcgttaacccgcgcgcagcatgcctgttggctg
ggcgtcactgatctcaagcgcggcaataacaacagctcggtgctgcacctgtcggcgttg
ggttatttgctcggtggcggtgccgctttgggcgagtccagcgaactgaatcgctggctg
cgggatctgcagcaagactgcccggccatcggcatcagcgaaatgcctcagcccactgat
gagcattaccaaccgccgcgcaatgaagcagtgctacgagcgacgctacggcccaagcgc
aaagccagtgaaaactggtggatcgcttcctatagcgctttgcgcatcagcgacatattg
agcgtcggcagcgatgaagcaccggacagtccgcaggcgcaaaagctcttcgacgacgag
cgcctcgatcccgacgcgccacatgaaatcagcagcggtggcgccgatatccaccgtttt
cctcgcggaccgaatcccggcacgtttttgcatggcttgctcgaatgggcgggcgctgaa
ggtttttcggttacccgcgaagcgctggaagatgcaattgcccggcgttgcaacctgcgc
ggctggcaaggctggatcaccacgctgactgactggctgccgcatttgctcaagtcaccg
ttgccgatcgctggcgggcaaccgccggtggttcttgagcagttgaagcaataccgcgtc
gagatggagttctggtttgccagccacaaagtcgacgtgctcaagctcgacgaacaggtg
cgccagcacacccacaatggcgtcgctcgtgttgcggcagaaccggttcagctcaacggc
atgttcaagggctttatcgacctgaccttcgagcacgctggccgttactacgtcgccgat
tacaaatccaattggctcggcgtggatgatcaggcctacacggtgcaggcgatggagcag
tcgatcctcgacaaccgttatgacctgcaatacgtgctgtatctgctggcactgcatcgc
cagttgaaggcgcggctggcggattacgattacgaccgtcacatcggcggggcgctgtat
ctgtttctgcgcggtacgcgtgcggaaagtcgtggcgtgtacttcgtgcgtccgccacgg
gaattgatcgaacgcctcgaccggatgttccagggcaaacccgaacccaagtccgaaccc
gcctgggaacagggagtcctgctatga
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