KEGG   Pseudomonas koreensis: AYO71_07380
Entry
AYO71_07380       CDS       T04647                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pkr  Pseudomonas koreensis
Pathway
pkr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AYO71_07380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pkr03021]
    AYO71_07380
Transcription machinery [BR:pkr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AYO71_07380
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_20 HTH_24 GerE HTH_28 HTH_5 HTH_10 HTH_7 Trp_repressor HTH_11 HTH_36 HTH_38 HTH_40 HTH_IclR TnsD HTH_DeoR HTH_29 Rv2175c_wHTH PhyR_sigma-like MarR_2
Other DBs
NCBI-ProteinID: AMT87368
LinkDB
Position
complement(1696122..1696652)
AA seq 176 aa
MHVLYASFASGVISLPPAHPVESLYHAHHSWLTGWLRRKLGCPDSAADLAQDTFIKVLTA
REPPVIIEPRAFLTTLAKRVLFNHYRRQDVERAYLETLAQMPEMVAPSEEHKAIILQTLV
ELDELLDGLPRQVKRAFLLAQVDGLTYPQIAAELGISVATVKRHLNKAAMRCYFAL
NT seq 531 nt   +upstreamnt  +downstreamnt
atgcacgttctctacgcaagttttgcgtccggagtcatttcgttgccgcccgcccatccc
gtcgaatcgctctaccatgcccatcacagttggctcaccggctggttgcggcgcaagctc
ggctgcccggacagtgcggcggatctggcccaggacacgttcatcaaagtgctgaccgcc
cgcgagccaccagtgatcatcgagccgcgcgcctttctcactacgctggccaagcgcgta
ctgttcaaccattaccggcggcaggatgtggaacgcgcctacctcgagacactggcgcag
atgccggaaatggtcgcgccgtcggaagagcacaaagcgatcatcctgcagacactggtc
gaactcgatgagctgctcgacggtttgccgcgccaggtcaaacgcgccttcctgctcgcg
caggtcgatggtctgacttatccacagatcgccgcagaactgggcatctcggtggccacg
gtcaaacgccatttgaacaaagcggccatgcgctgctatttcgccctgtga

DBGET integrated database retrieval system