Pseudomonas koreensis: AYO71_10555
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Entry
AYO71_10555 CDS
T04647
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pkr
Pseudomonas koreensis
Pathway
pkr02020
Two-component system
pkr02025
Biofilm formation - Pseudomonas aeruginosa
pkr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AYO71_10555
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
AYO71_10555
02025 Biofilm formation - Pseudomonas aeruginosa
AYO71_10555
09142 Cell motility
02040 Flagellar assembly
AYO71_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pkr03000
]
AYO71_10555
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pkr02035
]
AYO71_10555
Transcription factors [BR:
pkr03000
]
Prokaryotic type
Helix-turn-helix
Other families
AYO71_10555
Bacterial motility proteins [BR:
pkr02035
]
Flagellar system
Flagellar assembly proteins
Others
AYO71_10555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_7
nSTAND3
AAA_22
bpMoxR
AAA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMT87963
LinkDB
All DBs
Position
2384446..2385921
Genome browser
AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV
NAPGALLGLLKTLATWDEFLPVLLMGDNSSVDLPEDQRRRVLSTLEMPPSYSKLLDSLHR
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEIGSFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPD
FSANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRAGGDEQADD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaattctgctgatcgatgacgatagcgtccgccgccgcgacctg
gcggtgattctaaattttcttggcgaagaaaatttaccctgcggcagccatgactggcag
caggcagtcggctctttgtcgtctagtcgtgaagtcatttgcgtactgatcgggaccgtt
aatgctcctggcgcgcttttgggcttgctaaagacactcgcaacctgggatgagttcctt
ccggttttgttaatgggcgataattcttccgttgacctgcctgaagaccagcgtcgccgc
gtgctgtcgaccctggaaatgccgcccagctacagcaaattgctcgattcgctgcatcgc
gcccaggtctatcgcgaaatgtacgaccaagcccgcgagcgcggccgtcatcgcgaaccc
aatcttttccgcagtcttgtcggcaccagccgtgcgattcagcacgtccggcagatgatg
cagcaagtggccgacaccgacgccagcgtgctgatcctcggcgagtccggcaccggcaag
gaagtggtcgcgcgcaacctgcactaccactccaaacgccgcgacgcgccgttcgttccg
gtcaattgcggggcgatccctgcagagctgctcgaaagcgaactgttcggccacgagaag
ggcgctttcactggcgcgatcaccagccgtgccgggcgctttgagctggccaacggcggc
acgctgttcctcgacgaaatcggcgacatgccgctgccgatgcaggtcaagctgctgcgc
gtattgcaagagcgcaccttcgaacgcgtgggcagcaacaagacccagagcgtcgacgtg
cgcatcattgccgcaacgcacaagaatctcgaaagcatgatcgagatcggctcgttccgc
gaagatctctactatcgcctgaacgtgttcccgatcgagatggcgccgctgcgtgagcgc
gtcgaagacatcccgctgctgatgaacgaactgatctcgcgcatggagcacgagaagcgc
ggttcgatccgtttcaactcggcggcgatcatgtcgctgtgccgtcacggctggccgggc
aacgtccgcgaactcgccaacctggtcgagcgcatggcgatcatgcacccgtacggggtg
attggcgtggtcgagttgccgaagaaattccgctacgtcgacgacgaagacgagcagatg
gtcgacagcctgcgcagcgatctggaagaacgcgtggccatcaacggccatacgccggac
ttcagcgccaatgcactgctgccgccggaaggtctcgacctcaaagactacctcgggggc
ctggagcagggcctgattcagcaagcgctggacgacgccaatggcattgttgcccgcgcc
gctgagcggctgcgcatccgtcgcaccaccctggtcgagaagatgcgcaagtacggcatg
agccgtgctggaggagatgaacaggcggatgattga
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