KEGG   Pseudomonas koreensis: AYO71_16460
Entry
AYO71_16460       CDS       T04647                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pkr  Pseudomonas koreensis
Pathway
pkr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AYO71_16460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pkr03021]
    AYO71_16460
Transcription machinery [BR:pkr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AYO71_16460
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 GerE HTH_11 HTH_28 TnsD HTH_38 PhyR_sigma-like RovC_DNA-bd HTH_29 DUF6362 Xre-like-HTH HTH_24 HTH_7 HTH_36 HTH_40 HTH_Tnp_ISL3 HTH_Mga DUF8040 HTH_17 DUF1804 HTH_31
Other DBs
NCBI-ProteinID: AMT89055
LinkDB
Position
3674900..3675409
AA seq 169 aa
MIEATSPSEQSLQQLYREHRGWLETWLRRRMGNAWDAADLSQDTFVRVLCNAPPLAELRE
PRAYLLTVGKRLLSNFYTRRHLEKAYLDALAQLPEACAPSPEQRWLLLETLQALDELLDG
LPRAVRRAFLWSQIEGLGYREIAERLQVSERTVKRYMAQAYEHCLLVDL
NT seq 510 nt   +upstreamnt  +downstreamnt
atgattgaagccacgtcaccgtcggagcaaagcctgcagcagttgtaccgcgagcatcgc
ggctggctggaaacctggctgcgccggcgcatgggcaatgcgtgggatgcggcggacctc
agtcaagacacctttgtccgcgtcctgtgcaacgcgccgccactggctgaattgcgcgag
ccgcgcgcgtatctgctcaccgtcggcaaacggctactgagcaatttctacacgcggcgc
catctggaaaaagcctacctcgatgccttggcgcaattgccggaagcgtgcgcaccgtcg
ccggagcagcgctggttgctgctggaaaccttgcaggcgctggatgaattgctcgatggc
ttgccacgtgcggtgcggcgggcatttctttggagtcaaatcgagggccttggctaccgc
gagattgccgaacgcttgcaggtttccgagcgcacggtgaaacgttacatggcccaggcg
tacgagcattgtttgctggtggatctctga

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