Pseudomonas koreensis: AYO71_17740
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Entry
AYO71_17740 CDS
T04647
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pkr
Pseudomonas koreensis
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkr03032
]
AYO71_17740
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_17740
Enzymes [BR:
pkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AYO71_17740
DNA replication proteins [BR:
pkr03032
]
Prokaryotic type
DNA Topoisomerases
AYO71_17740
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AYO71_17740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AMT89285
LinkDB
All DBs
Position
3986932..3987969
Genome browser
AA seq
345 aa
AA seq
DB search
MPDTVLTDALPADLHYVDDTQPGITRKKLRGKFVYFEPSGQRISDPEEIKRINALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHARWREVRDADKYSRLREFGLALPKLRRQLE
ALLDAPGFSRDKVMATVITLLDATLIRVGNTQYARDNRSYGLTTLRSRHVEVNGSAILFQ
FRGKSGIEHQITVKDRRLARIIKRCLEIPGQNLFQYLDEHGERHTVTSSDVNAYLQKLTG
AEFTAKDYRTWAGSALALAVLRELQHESETEAKRHVVEAVKNVAKQLGNTPAVCRKCYIH
PAVLEHFMLGALAELPRPRVRIGLRAEEVALAMFLERMCEVSEAS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataccgtgctgacagatgccctgcccgccgatctgcattacgtcgatgacact
cagcctggtatcacccggaaaaaactgcgcggcaagttcgtctatttcgaaccgtcgggc
cagcgcatcagcgacccggaggaaatcaaacgcatcaacgccctcgcggtgccgccggct
tacaccgatgtgtggatctgcgccgacccgcgcggtcatctgcaagccaccggccgcgat
gcgcgcgggcgcaagcagtaccgttatcacgcgcgctggcgcgaagtgcgcgacgccgac
aaatactcgcgcctgcgagagttcggcctggcactgcccaaactgcggcgccagcttgag
gcgctgctcgacgccccgggcttcagccgcgacaaggtcatggccacggtcatcaccttg
ctcgacgccacgctgatccgcgtcggcaatacccaatatgcgcgggacaatcgctcttat
ggcctgaccacgttgcgcagccgacatgtcgaggtcaatggcagcgcgatcctgttccag
ttccgcggcaagagcggcatcgagcaccagatcaccgtcaaggatcggcgtctggcgcga
atcatcaagcgctgcctggagattcccgggcaaaacctgtttcagtaccttgatgaacac
ggcgaacggcacactgtcacctcctccgacgtcaacgcctatctgcaaaagctcaccggc
gctgaattcaccgccaaggactaccgcacctgggcgggcagcgcattggctttggcagtg
ctgcgcgagttgcagcatgagtcggaaaccgaagccaagcgccatgtggtcgaagcggtg
aagaacgtcgccaaacagctgggcaacacgccagcggtgtgccgcaaatgctacatccac
cctgcggtgctcgaacatttcatgctcggcgcgctcgccgaactgccccgcccgagagtg
cgcataggcctgcgcgctgaggaagtagccttggcgatgtttctcgagcggatgtgtgag
gtgagcgaggcgtcctga
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